| Literature DB >> 23284506 |
Kaliyaperumal Thanigaimani1, Abbas Farhadikoutenaei, Nuridayanti Che Khalib, Suhana Arshad, Ibrahim Abdul Razak.
Abstract
The 3-chloro-benzoate anion of the title salt, C(6)H(9)N(2) (+)·C(7)H(4)ClO(2) (-), is nearly planar with a dihedral angle of 2.44 (13)° between the benzene ring and the carboxyl-ate group. In the crystal, the protonated N atom and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms of the anion via a pair of N-H⋯O hydrogen bonds with an R(2) (2)(8) ring motif, forming an approximately planar ion pair with a dihedral angle of 7.92 (5)° between the pyridinium and benzene rings. The ion pairs are further connected via N-H⋯O and C-H⋯O hydrogen bonds, forming a two-dimensional network parallel to the bc plane.Entities:
Year: 2012 PMID: 23284506 PMCID: PMC3515286 DOI: 10.1107/S1600536812043231
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C7H4ClO2− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 6768 reflections |
| θ = 2.3–30.1° | |
| µ = 0.30 mm−1 | |
| β = 101.521 (2)° | Block, colourless |
| 0.53 × 0.31 × 0.22 mm | |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 3629 independent reflections |
| Radiation source: fine-focus sealed tube | 3201 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.1°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 13594 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3629 reflections | (Δ/σ)max < 0.001 |
| 176 parameters | Δρmax = 0.48 e Å−3 |
| 0 restraints | Δρmin = −0.33 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 1.05016 (3) | 0.25195 (2) | 0.66489 (3) | 0.02535 (11) | |
| O1 | 0.60056 (10) | 0.65207 (8) | 0.46906 (7) | 0.02385 (19) | |
| O2 | 0.72588 (10) | 0.62484 (8) | 0.64581 (7) | 0.02350 (19) | |
| N1 | 0.45310 (10) | 0.81988 (8) | 0.55172 (8) | 0.01776 (19) | |
| N2 | 0.55220 (12) | 0.77783 (10) | 0.73908 (9) | 0.0219 (2) | |
| C1 | 0.46396 (12) | 0.84318 (9) | 0.66248 (10) | 0.0179 (2) | |
| C2 | 0.37858 (13) | 0.93693 (10) | 0.69173 (10) | 0.0210 (2) | |
| H2A | 0.3833 | 0.9561 | 0.7686 | 0.025* | |
| C3 | 0.28968 (13) | 0.99913 (10) | 0.60827 (11) | 0.0218 (2) | |
| H3A | 0.2327 | 1.0615 | 0.6283 | 0.026* | |
| C4 | 0.27996 (12) | 0.97334 (10) | 0.49275 (10) | 0.0204 (2) | |
| C5 | 0.36421 (12) | 0.88246 (10) | 0.46891 (10) | 0.0190 (2) | |
| H5A | 0.3607 | 0.8624 | 0.3924 | 0.023* | |
| C6 | 0.18156 (14) | 1.04262 (11) | 0.40224 (11) | 0.0262 (3) | |
| H6A | 0.1968 | 1.0170 | 0.3283 | 0.039* | |
| H6B | 0.2084 | 1.1239 | 0.4124 | 0.039* | |
| H6C | 0.0754 | 1.0321 | 0.4070 | 0.039* | |
| C7 | 0.69320 (12) | 0.59788 (9) | 0.54401 (9) | 0.0175 (2) | |
| C8 | 0.76799 (11) | 0.49160 (9) | 0.50805 (9) | 0.0159 (2) | |
| C9 | 0.86515 (12) | 0.42923 (9) | 0.59063 (9) | 0.0172 (2) | |
| H9A | 0.8840 | 0.4537 | 0.6670 | 0.021* | |
| C10 | 0.93380 (12) | 0.33117 (9) | 0.55982 (10) | 0.0180 (2) | |
| C11 | 0.91118 (13) | 0.29472 (10) | 0.44867 (10) | 0.0212 (2) | |
| H11A | 0.9603 | 0.2280 | 0.4288 | 0.025* | |
| C12 | 0.81496 (13) | 0.35797 (10) | 0.36693 (10) | 0.0224 (2) | |
| H12A | 0.7987 | 0.3345 | 0.2904 | 0.027* | |
| C13 | 0.74215 (12) | 0.45553 (10) | 0.39638 (9) | 0.0198 (2) | |
| H13A | 0.6750 | 0.4973 | 0.3402 | 0.024* | |
| H1N1 | 0.511 (3) | 0.7554 (18) | 0.526 (2) | 0.055 (7)* | |
| H1N2 | 0.617 (2) | 0.7251 (16) | 0.7129 (17) | 0.037 (5)* | |
| H2N2 | 0.574 (2) | 0.8015 (16) | 0.8114 (16) | 0.035 (4)* |
| Cl1 | 0.02441 (17) | 0.02607 (17) | 0.02424 (17) | 0.00991 (9) | 0.00168 (12) | 0.00262 (10) |
| O1 | 0.0302 (4) | 0.0259 (4) | 0.0161 (4) | 0.0125 (3) | 0.0061 (3) | 0.0030 (3) |
| O2 | 0.0285 (4) | 0.0253 (4) | 0.0163 (4) | 0.0075 (3) | 0.0034 (3) | −0.0021 (3) |
| N1 | 0.0183 (4) | 0.0195 (4) | 0.0156 (4) | 0.0034 (3) | 0.0037 (3) | −0.0019 (3) |
| N2 | 0.0240 (5) | 0.0262 (5) | 0.0150 (5) | 0.0050 (4) | 0.0025 (4) | −0.0025 (4) |
| C1 | 0.0168 (5) | 0.0201 (5) | 0.0173 (5) | −0.0003 (4) | 0.0047 (4) | −0.0028 (4) |
| C2 | 0.0206 (5) | 0.0231 (5) | 0.0203 (5) | 0.0005 (4) | 0.0066 (4) | −0.0061 (4) |
| C3 | 0.0193 (5) | 0.0207 (5) | 0.0263 (6) | 0.0030 (4) | 0.0064 (4) | −0.0047 (4) |
| C4 | 0.0183 (5) | 0.0202 (5) | 0.0230 (5) | 0.0024 (4) | 0.0045 (4) | 0.0000 (4) |
| C5 | 0.0189 (5) | 0.0215 (5) | 0.0166 (5) | 0.0021 (4) | 0.0038 (4) | −0.0006 (4) |
| C6 | 0.0253 (6) | 0.0258 (6) | 0.0269 (6) | 0.0084 (4) | 0.0038 (5) | 0.0024 (5) |
| C7 | 0.0195 (5) | 0.0181 (5) | 0.0163 (5) | 0.0023 (4) | 0.0069 (4) | 0.0013 (4) |
| C8 | 0.0156 (4) | 0.0169 (4) | 0.0159 (5) | 0.0012 (3) | 0.0049 (4) | 0.0000 (4) |
| C9 | 0.0166 (4) | 0.0187 (5) | 0.0164 (5) | 0.0011 (4) | 0.0037 (4) | 0.0000 (4) |
| C10 | 0.0146 (4) | 0.0188 (5) | 0.0205 (5) | 0.0019 (3) | 0.0030 (4) | 0.0016 (4) |
| C11 | 0.0197 (5) | 0.0203 (5) | 0.0238 (6) | 0.0029 (4) | 0.0046 (4) | −0.0039 (4) |
| C12 | 0.0242 (5) | 0.0246 (5) | 0.0182 (5) | 0.0032 (4) | 0.0036 (4) | −0.0047 (4) |
| C13 | 0.0208 (5) | 0.0223 (5) | 0.0160 (5) | 0.0033 (4) | 0.0029 (4) | −0.0003 (4) |
| Cl1—C10 | 1.7447 (11) | C5—H5A | 0.9500 |
| O1—C7 | 1.2729 (13) | C6—H6A | 0.9800 |
| O2—C7 | 1.2498 (14) | C6—H6B | 0.9800 |
| N1—C1 | 1.3535 (14) | C6—H6C | 0.9800 |
| N1—C5 | 1.3645 (14) | C7—C8 | 1.5163 (15) |
| N1—H1N1 | 1.00 (2) | C8—C13 | 1.3914 (15) |
| N2—C1 | 1.3348 (15) | C8—C9 | 1.3961 (15) |
| N2—H1N2 | 0.949 (19) | C9—C10 | 1.3870 (15) |
| N2—H2N2 | 0.90 (2) | C9—H9A | 0.9500 |
| C1—C2 | 1.4227 (15) | C10—C11 | 1.3878 (16) |
| C2—C3 | 1.3671 (17) | C11—C12 | 1.3914 (16) |
| C2—H2A | 0.9500 | C11—H11A | 0.9500 |
| C3—C4 | 1.4171 (17) | C12—C13 | 1.3955 (16) |
| C3—H3A | 0.9500 | C12—H12A | 0.9500 |
| C4—C5 | 1.3686 (15) | C13—H13A | 0.9500 |
| C4—C6 | 1.5019 (16) | ||
| C1—N1—C5 | 122.50 (10) | C4—C6—H6C | 109.5 |
| C1—N1—H1N1 | 121.5 (14) | H6A—C6—H6C | 109.5 |
| C5—N1—H1N1 | 116.0 (14) | H6B—C6—H6C | 109.5 |
| C1—N2—H1N2 | 117.5 (12) | O2—C7—O1 | 124.84 (10) |
| C1—N2—H2N2 | 119.1 (12) | O2—C7—C8 | 117.27 (9) |
| H1N2—N2—H2N2 | 119.4 (17) | O1—C7—C8 | 117.88 (10) |
| N2—C1—N1 | 119.33 (10) | C13—C8—C9 | 119.93 (10) |
| N2—C1—C2 | 122.91 (11) | C13—C8—C7 | 121.91 (9) |
| N1—C1—C2 | 117.75 (10) | C9—C8—C7 | 118.16 (9) |
| C3—C2—C1 | 119.39 (11) | C10—C9—C8 | 119.15 (10) |
| C3—C2—H2A | 120.3 | C10—C9—H9A | 120.4 |
| C1—C2—H2A | 120.3 | C8—C9—H9A | 120.4 |
| C2—C3—C4 | 121.97 (10) | C9—C10—C11 | 121.77 (10) |
| C2—C3—H3A | 119.0 | C9—C10—Cl1 | 118.45 (9) |
| C4—C3—H3A | 119.0 | C11—C10—Cl1 | 119.77 (8) |
| C5—C4—C3 | 116.45 (10) | C10—C11—C12 | 118.59 (10) |
| C5—C4—C6 | 122.35 (11) | C10—C11—H11A | 120.7 |
| C3—C4—C6 | 121.20 (10) | C12—C11—H11A | 120.7 |
| N1—C5—C4 | 121.94 (10) | C11—C12—C13 | 120.61 (11) |
| N1—C5—H5A | 119.0 | C11—C12—H12A | 119.7 |
| C4—C5—H5A | 119.0 | C13—C12—H12A | 119.7 |
| C4—C6—H6A | 109.5 | C8—C13—C12 | 119.93 (10) |
| C4—C6—H6B | 109.5 | C8—C13—H13A | 120.0 |
| H6A—C6—H6B | 109.5 | C12—C13—H13A | 120.0 |
| C5—N1—C1—N2 | 179.47 (10) | O2—C7—C8—C9 | 1.54 (15) |
| C5—N1—C1—C2 | −0.06 (16) | O1—C7—C8—C9 | −177.53 (10) |
| N2—C1—C2—C3 | −179.39 (11) | C13—C8—C9—C10 | −0.51 (16) |
| N1—C1—C2—C3 | 0.12 (16) | C7—C8—C9—C10 | 179.45 (9) |
| C1—C2—C3—C4 | −0.16 (18) | C8—C9—C10—C11 | 1.46 (16) |
| C2—C3—C4—C5 | 0.13 (17) | C8—C9—C10—Cl1 | −178.02 (8) |
| C2—C3—C4—C6 | 179.96 (11) | C9—C10—C11—C12 | −1.01 (17) |
| C1—N1—C5—C4 | 0.03 (17) | Cl1—C10—C11—C12 | 178.47 (9) |
| C3—C4—C5—N1 | −0.06 (16) | C10—C11—C12—C13 | −0.39 (18) |
| C6—C4—C5—N1 | −179.89 (10) | C9—C8—C13—C12 | −0.85 (17) |
| O2—C7—C8—C13 | −178.50 (10) | C7—C8—C13—C12 | 179.19 (10) |
| O1—C7—C8—C13 | 2.43 (16) | C11—C12—C13—C8 | 1.32 (18) |
| H··· | ||||
| N1—H1 | 1.00 (2) | 1.68 (2) | 2.6716 (13) | 174 (2) |
| N2—H1 | 0.946 (19) | 1.820 (19) | 2.7618 (15) | 173.0 (19) |
| N2—H2 | 0.90 (2) | 1.95 (2) | 2.8526 (14) | 174.0 (17) |
| C2—H2 | 0.95 | 2.52 | 3.2104 (15) | 130 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 1.00 (2) | 1.68 (2) | 2.6716 (13) | 174 (2) |
| N2—H1 | 0.946 (19) | 1.820 (19) | 2.7618 (15) | 173.0 (19) |
| N2—H2 | 0.90 (2) | 1.95 (2) | 2.8526 (14) | 174.0 (17) |
| C2—H2 | 0.95 | 2.52 | 3.2104 (15) | 130 |
Symmetry codes: (i) ; (ii) .