| Literature DB >> 21588043 |
Madhukar Hemamalini1, Hoong-Kun Fun.
Abstract
In the title salt, C(6)H(9)N(2) (+)·C(7)H(4)ClO(2) (-), the 2-amino-4-methyl-pyridinium cation is almost planar, with a maximum deviation of 0.010 (1) Å. In the crystal, the protonated N atom and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms of the anion via a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. The ion pairs are further connected via N-H⋯O and C-H⋯O hydrogen bonds, forming a two-dimensional network parallel to the bc plane.Entities:
Year: 2010 PMID: 21588043 PMCID: PMC3006694 DOI: 10.1107/S160053681002444X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C7H4ClO2− | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 6601 reflections |
| θ = 3.9–35.1° | |
| µ = 0.31 mm−1 | |
| β = 93.526 (2)° | Needle, colourless |
| 0.28 × 0.17 × 0.10 mm | |
| Bruker APEXII DUO CCD diffractometer | 4207 independent reflections |
| Radiation source: fine-focus sealed tube | 4076 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.5°, θmin = 3.9° |
| Absorption correction: multi-scan ( | |
| 9325 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 4207 reflections | Δρmax = 0.64 e Å−3 |
| 164 parameters | Δρmin = −0.54 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1860 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.01 (4) |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cl1 | 0.03584 (4) | 1.13218 (6) | 0.91629 (3) | 0.02460 (10) | |
| O1 | 0.36548 (12) | 0.41445 (16) | 0.66474 (7) | 0.01744 (18) | |
| O2 | 0.36855 (12) | 0.47553 (16) | 0.86099 (7) | 0.01876 (19) | |
| C7 | 0.18473 (15) | 0.7570 (2) | 0.61091 (10) | 0.0158 (2) | |
| H7A | 0.2131 | 0.6782 | 0.5478 | 0.019* | |
| C8 | 0.09543 (15) | 0.9288 (2) | 0.58796 (11) | 0.0197 (2) | |
| H8A | 0.0654 | 0.9648 | 0.5096 | 0.024* | |
| C9 | 0.05103 (16) | 1.0466 (2) | 0.68188 (12) | 0.0195 (2) | |
| H9A | −0.0078 | 1.1618 | 0.6671 | 0.023* | |
| C10 | 0.09626 (15) | 0.9890 (2) | 0.79852 (10) | 0.0159 (2) | |
| C11 | 0.18604 (14) | 0.8195 (2) | 0.82290 (10) | 0.0148 (2) | |
| H11A | 0.2155 | 0.7838 | 0.9014 | 0.018* | |
| C12 | 0.23182 (14) | 0.70259 (19) | 0.72825 (10) | 0.01258 (19) | |
| C13 | 0.32902 (14) | 0.51628 (19) | 0.75345 (10) | 0.0131 (2) | |
| N1 | 0.53373 (13) | 1.07928 (17) | 0.70756 (8) | 0.01350 (18) | |
| H1A | 0.4786 | 1.1863 | 0.6979 | 0.016* | |
| N2 | 0.53701 (13) | 1.1268 (3) | 0.91147 (8) | 0.0185 (2) | |
| H2B | 0.4837 | 1.2344 | 0.8986 | 0.022* | |
| H2C | 0.5638 | 1.0902 | 0.9835 | 0.022* | |
| C1 | 0.57797 (14) | 1.01721 (19) | 0.82012 (10) | 0.0133 (2) | |
| C2 | 0.66378 (14) | 0.8378 (2) | 0.83484 (10) | 0.0144 (2) | |
| H2A | 0.6936 | 0.7919 | 0.9112 | 0.017* | |
| C3 | 0.70348 (14) | 0.73057 (19) | 0.73661 (10) | 0.0141 (2) | |
| C4 | 0.65921 (14) | 0.8046 (2) | 0.62099 (10) | 0.0152 (2) | |
| H4A | 0.6878 | 0.7364 | 0.5535 | 0.018* | |
| C5 | 0.57458 (14) | 0.9762 (2) | 0.60956 (9) | 0.0143 (2) | |
| H5A | 0.5441 | 1.0239 | 0.5337 | 0.017* | |
| C6 | 0.79035 (16) | 0.5371 (2) | 0.75110 (12) | 0.0195 (2) | |
| H6A | 0.9016 | 0.5472 | 0.7239 | 0.029* | |
| H6B | 0.7286 | 0.4404 | 0.7048 | 0.029* | |
| H6C | 0.7964 | 0.5002 | 0.8338 | 0.029* |
| Cl1 | 0.02597 (15) | 0.02386 (18) | 0.02371 (15) | 0.00755 (12) | −0.00058 (10) | −0.00950 (12) |
| O1 | 0.0271 (4) | 0.0139 (4) | 0.0114 (3) | 0.0054 (3) | 0.0016 (3) | −0.0014 (3) |
| O2 | 0.0299 (4) | 0.0157 (5) | 0.0104 (3) | 0.0044 (4) | −0.0002 (3) | 0.0000 (3) |
| C7 | 0.0166 (4) | 0.0184 (6) | 0.0123 (4) | 0.0012 (4) | 0.0013 (3) | 0.0016 (4) |
| C8 | 0.0203 (5) | 0.0227 (7) | 0.0160 (5) | 0.0047 (5) | 0.0006 (4) | 0.0050 (5) |
| C9 | 0.0189 (5) | 0.0184 (7) | 0.0213 (5) | 0.0041 (4) | 0.0007 (4) | 0.0019 (5) |
| C10 | 0.0147 (4) | 0.0158 (6) | 0.0173 (4) | 0.0005 (4) | 0.0016 (3) | −0.0023 (4) |
| C11 | 0.0159 (4) | 0.0148 (6) | 0.0135 (4) | 0.0000 (4) | 0.0007 (3) | −0.0009 (4) |
| C12 | 0.0131 (4) | 0.0126 (5) | 0.0121 (4) | −0.0009 (4) | 0.0013 (3) | 0.0007 (4) |
| C13 | 0.0175 (4) | 0.0108 (5) | 0.0109 (4) | −0.0016 (4) | 0.0013 (3) | 0.0000 (4) |
| N1 | 0.0177 (4) | 0.0123 (5) | 0.0106 (4) | −0.0005 (3) | 0.0009 (3) | 0.0017 (3) |
| N2 | 0.0292 (5) | 0.0162 (5) | 0.0100 (4) | 0.0049 (4) | 0.0009 (3) | −0.0003 (4) |
| C1 | 0.0164 (4) | 0.0130 (5) | 0.0104 (4) | −0.0015 (4) | 0.0017 (3) | 0.0018 (4) |
| C2 | 0.0175 (4) | 0.0135 (6) | 0.0123 (4) | 0.0005 (4) | 0.0012 (3) | 0.0027 (4) |
| C3 | 0.0138 (4) | 0.0133 (6) | 0.0152 (4) | −0.0010 (4) | 0.0016 (3) | 0.0007 (4) |
| C4 | 0.0161 (4) | 0.0164 (6) | 0.0130 (4) | −0.0008 (4) | 0.0012 (3) | −0.0014 (4) |
| C5 | 0.0169 (4) | 0.0161 (6) | 0.0099 (4) | −0.0021 (4) | 0.0012 (3) | 0.0001 (4) |
| C6 | 0.0199 (5) | 0.0158 (6) | 0.0228 (5) | 0.0032 (4) | 0.0024 (4) | 0.0010 (4) |
| Cl1—C10 | 1.7383 (13) | N1—H1A | 0.8600 |
| O1—C13 | 1.2643 (14) | N2—C1 | 1.3280 (18) |
| O2—C13 | 1.2593 (14) | N2—H2B | 0.8600 |
| C7—C8 | 1.3934 (19) | N2—H2C | 0.8600 |
| C7—C12 | 1.3972 (16) | C1—C2 | 1.4138 (18) |
| C7—H7A | 0.9300 | C2—C3 | 1.3779 (16) |
| C8—C9 | 1.3909 (19) | C2—H2A | 0.9300 |
| C8—H8A | 0.9300 | C3—C4 | 1.4170 (16) |
| C9—C10 | 1.3927 (17) | C3—C6 | 1.5019 (19) |
| C9—H9A | 0.9300 | C4—C5 | 1.3599 (18) |
| C10—C11 | 1.3849 (19) | C4—H4A | 0.9300 |
| C11—C12 | 1.3968 (17) | C5—H5A | 0.9300 |
| C11—H11A | 0.9300 | C6—H6A | 0.9600 |
| C12—C13 | 1.5134 (18) | C6—H6B | 0.9600 |
| N1—C1 | 1.3582 (14) | C6—H6C | 0.9600 |
| N1—C5 | 1.3636 (15) | ||
| C8—C7—C12 | 120.35 (12) | C1—N2—H2B | 120.0 |
| C8—C7—H7A | 119.8 | C1—N2—H2C | 120.0 |
| C12—C7—H7A | 119.8 | H2B—N2—H2C | 120.0 |
| C9—C8—C7 | 120.21 (11) | N2—C1—N1 | 118.49 (12) |
| C9—C8—H8A | 119.9 | N2—C1—C2 | 122.93 (11) |
| C7—C8—H8A | 119.9 | N1—C1—C2 | 118.57 (11) |
| C8—C9—C10 | 118.87 (12) | C3—C2—C1 | 120.36 (10) |
| C8—C9—H9A | 120.6 | C3—C2—H2A | 119.8 |
| C10—C9—H9A | 120.6 | C1—C2—H2A | 119.8 |
| C11—C10—C9 | 121.68 (12) | C2—C3—C4 | 118.91 (11) |
| C11—C10—Cl1 | 119.30 (9) | C2—C3—C6 | 120.86 (11) |
| C9—C10—Cl1 | 119.01 (10) | C4—C3—C6 | 120.22 (11) |
| C10—C11—C12 | 119.26 (11) | C5—C4—C3 | 119.42 (11) |
| C10—C11—H11A | 120.4 | C5—C4—H4A | 120.3 |
| C12—C11—H11A | 120.4 | C3—C4—H4A | 120.3 |
| C11—C12—C7 | 119.63 (12) | C4—C5—N1 | 121.04 (11) |
| C11—C12—C13 | 119.90 (10) | C4—C5—H5A | 119.5 |
| C7—C12—C13 | 120.47 (11) | N1—C5—H5A | 119.5 |
| O2—C13—O1 | 125.07 (12) | C3—C6—H6A | 109.5 |
| O2—C13—C12 | 117.52 (10) | C3—C6—H6B | 109.5 |
| O1—C13—C12 | 117.41 (10) | H6A—C6—H6B | 109.5 |
| C1—N1—C5 | 121.66 (11) | C3—C6—H6C | 109.5 |
| C1—N1—H1A | 119.2 | H6A—C6—H6C | 109.5 |
| C5—N1—H1A | 119.2 | H6B—C6—H6C | 109.5 |
| C12—C7—C8—C9 | −0.62 (19) | C11—C12—C13—O1 | 179.10 (11) |
| C7—C8—C9—C10 | −0.5 (2) | C7—C12—C13—O1 | 0.27 (16) |
| C8—C9—C10—C11 | 0.9 (2) | C5—N1—C1—N2 | 178.68 (11) |
| C8—C9—C10—Cl1 | −178.18 (10) | C5—N1—C1—C2 | −2.06 (17) |
| C9—C10—C11—C12 | −0.32 (18) | N2—C1—C2—C3 | −179.79 (12) |
| Cl1—C10—C11—C12 | 178.81 (9) | N1—C1—C2—C3 | 0.98 (17) |
| C10—C11—C12—C7 | −0.79 (17) | C1—C2—C3—C4 | 0.97 (17) |
| C10—C11—C12—C13 | −179.62 (10) | C1—C2—C3—C6 | −178.29 (10) |
| C8—C7—C12—C11 | 1.26 (18) | C2—C3—C4—C5 | −1.91 (17) |
| C8—C7—C12—C13 | −179.91 (11) | C6—C3—C4—C5 | 177.35 (11) |
| C11—C12—C13—O2 | −1.50 (17) | C3—C4—C5—N1 | 0.90 (17) |
| C7—C12—C13—O2 | 179.67 (11) | C1—N1—C5—C4 | 1.13 (17) |
| H··· | ||||
| N1—H1A···O1i | 0.86 | 1.83 | 2.6921 (16) | 175 |
| N2—H2B···O2i | 0.86 | 1.93 | 2.786 (2) | 177 |
| N2—H2C···O2ii | 0.86 | 1.96 | 2.8146 (14) | 173 |
| C5—H5A···O1iii | 0.93 | 2.50 | 3.1707 (13) | 129 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 1.83 | 2.6921 (16) | 175 |
| N2—H2 | 0.86 | 1.93 | 2.786 (2) | 177 |
| N2—H2 | 0.86 | 1.96 | 2.8146 (14) | 173 |
| C5—H5 | 0.93 | 2.50 | 3.1707 (13) | 129 |
Symmetry codes: (i) ; (ii) ; (iii) .