Literature DB >> 21588043

2-Amino-4-methyl-pyridinium 3-chloro-benzoate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title salt, C(6)H(9)N(2) (+)·C(7)H(4)ClO(2) (-), the 2-amino-4-methyl-pyridinium cation is almost planar, with a maximum deviation of 0.010 (1) Å. In the crystal, the protonated N atom and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms of the anion via a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. The ion pairs are further connected via N-H⋯O and C-H⋯O hydrogen bonds, forming a two-dimensional network parallel to the bc plane.

Entities:  

Year:  2010        PMID: 21588043      PMCID: PMC3006694          DOI: 10.1107/S160053681002444X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of non-covalent inter­actions, see: Remenar et al. (2003 ▶); Aakeroÿ et al. (2001 ▶); Sokolov et al. (2006 ▶). For related structures, see: Kvick & Noordik (1977 ▶); Shen et al. (2008 ▶); Hemamalini & Fun (2010 ▶). For details of hydrogen bonding, see: Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶); Scheiner (1997 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H9N2C7H4ClO2 M = 264.70 Monoclinic, a = 7.9930 (6) Å b = 6.8608 (5) Å c = 11.2148 (9) Å β = 93.526 (2)° V = 613.84 (8) Å3 Z = 2 Mo Kα radiation μ = 0.31 mm−1 T = 100 K 0.28 × 0.17 × 0.10 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.919, T max = 0.971 9325 measured reflections 4207 independent reflections 4076 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.117 S = 1.22 4207 reflections 164 parameters 1 restraint H-atom parameters constrained Δρmax = 0.64 e Å−3 Δρmin = −0.54 e Å−3 Absolute structure: Flack (1983 ▶), 1860 Friedel pairs Flack parameter: −0.01 (4) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681002444X/hb5503sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681002444X/hb5503Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H4ClO2F(000) = 276
Mr = 264.70Dx = 1.432 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 6601 reflections
a = 7.9930 (6) Åθ = 3.9–35.1°
b = 6.8608 (5) ŵ = 0.31 mm1
c = 11.2148 (9) ÅT = 100 K
β = 93.526 (2)°Needle, colourless
V = 613.84 (8) Å30.28 × 0.17 × 0.10 mm
Z = 2
Bruker APEXII DUO CCD diffractometer4207 independent reflections
Radiation source: fine-focus sealed tube4076 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 32.5°, θmin = 3.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→12
Tmin = 0.919, Tmax = 0.971k = −10→10
9325 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.117w = 1/[σ2(Fo2) + (0.0801P)2] where P = (Fo2 + 2Fc2)/3
S = 1.22(Δ/σ)max < 0.001
4207 reflectionsΔρmax = 0.64 e Å3
164 parametersΔρmin = −0.54 e Å3
1 restraintAbsolute structure: Flack (1983), 1860 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.01 (4)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.03584 (4)1.13218 (6)0.91629 (3)0.02460 (10)
O10.36548 (12)0.41445 (16)0.66474 (7)0.01744 (18)
O20.36855 (12)0.47553 (16)0.86099 (7)0.01876 (19)
C70.18473 (15)0.7570 (2)0.61091 (10)0.0158 (2)
H7A0.21310.67820.54780.019*
C80.09543 (15)0.9288 (2)0.58796 (11)0.0197 (2)
H8A0.06540.96480.50960.024*
C90.05103 (16)1.0466 (2)0.68188 (12)0.0195 (2)
H9A−0.00781.16180.66710.023*
C100.09626 (15)0.9890 (2)0.79852 (10)0.0159 (2)
C110.18604 (14)0.8195 (2)0.82290 (10)0.0148 (2)
H11A0.21550.78380.90140.018*
C120.23182 (14)0.70259 (19)0.72825 (10)0.01258 (19)
C130.32902 (14)0.51628 (19)0.75345 (10)0.0131 (2)
N10.53373 (13)1.07928 (17)0.70756 (8)0.01350 (18)
H1A0.47861.18630.69790.016*
N20.53701 (13)1.1268 (3)0.91147 (8)0.0185 (2)
H2B0.48371.23440.89860.022*
H2C0.56381.09020.98350.022*
C10.57797 (14)1.01721 (19)0.82012 (10)0.0133 (2)
C20.66378 (14)0.8378 (2)0.83484 (10)0.0144 (2)
H2A0.69360.79190.91120.017*
C30.70348 (14)0.73057 (19)0.73661 (10)0.0141 (2)
C40.65921 (14)0.8046 (2)0.62099 (10)0.0152 (2)
H4A0.68780.73640.55350.018*
C50.57458 (14)0.9762 (2)0.60956 (9)0.0143 (2)
H5A0.54411.02390.53370.017*
C60.79035 (16)0.5371 (2)0.75110 (12)0.0195 (2)
H6A0.90160.54720.72390.029*
H6B0.72860.44040.70480.029*
H6C0.79640.50020.83380.029*
U11U22U33U12U13U23
Cl10.02597 (15)0.02386 (18)0.02371 (15)0.00755 (12)−0.00058 (10)−0.00950 (12)
O10.0271 (4)0.0139 (4)0.0114 (3)0.0054 (3)0.0016 (3)−0.0014 (3)
O20.0299 (4)0.0157 (5)0.0104 (3)0.0044 (4)−0.0002 (3)0.0000 (3)
C70.0166 (4)0.0184 (6)0.0123 (4)0.0012 (4)0.0013 (3)0.0016 (4)
C80.0203 (5)0.0227 (7)0.0160 (5)0.0047 (5)0.0006 (4)0.0050 (5)
C90.0189 (5)0.0184 (7)0.0213 (5)0.0041 (4)0.0007 (4)0.0019 (5)
C100.0147 (4)0.0158 (6)0.0173 (4)0.0005 (4)0.0016 (3)−0.0023 (4)
C110.0159 (4)0.0148 (6)0.0135 (4)0.0000 (4)0.0007 (3)−0.0009 (4)
C120.0131 (4)0.0126 (5)0.0121 (4)−0.0009 (4)0.0013 (3)0.0007 (4)
C130.0175 (4)0.0108 (5)0.0109 (4)−0.0016 (4)0.0013 (3)0.0000 (4)
N10.0177 (4)0.0123 (5)0.0106 (4)−0.0005 (3)0.0009 (3)0.0017 (3)
N20.0292 (5)0.0162 (5)0.0100 (4)0.0049 (4)0.0009 (3)−0.0003 (4)
C10.0164 (4)0.0130 (5)0.0104 (4)−0.0015 (4)0.0017 (3)0.0018 (4)
C20.0175 (4)0.0135 (6)0.0123 (4)0.0005 (4)0.0012 (3)0.0027 (4)
C30.0138 (4)0.0133 (6)0.0152 (4)−0.0010 (4)0.0016 (3)0.0007 (4)
C40.0161 (4)0.0164 (6)0.0130 (4)−0.0008 (4)0.0012 (3)−0.0014 (4)
C50.0169 (4)0.0161 (6)0.0099 (4)−0.0021 (4)0.0012 (3)0.0001 (4)
C60.0199 (5)0.0158 (6)0.0228 (5)0.0032 (4)0.0024 (4)0.0010 (4)
Cl1—C101.7383 (13)N1—H1A0.8600
O1—C131.2643 (14)N2—C11.3280 (18)
O2—C131.2593 (14)N2—H2B0.8600
C7—C81.3934 (19)N2—H2C0.8600
C7—C121.3972 (16)C1—C21.4138 (18)
C7—H7A0.9300C2—C31.3779 (16)
C8—C91.3909 (19)C2—H2A0.9300
C8—H8A0.9300C3—C41.4170 (16)
C9—C101.3927 (17)C3—C61.5019 (19)
C9—H9A0.9300C4—C51.3599 (18)
C10—C111.3849 (19)C4—H4A0.9300
C11—C121.3968 (17)C5—H5A0.9300
C11—H11A0.9300C6—H6A0.9600
C12—C131.5134 (18)C6—H6B0.9600
N1—C11.3582 (14)C6—H6C0.9600
N1—C51.3636 (15)
C8—C7—C12120.35 (12)C1—N2—H2B120.0
C8—C7—H7A119.8C1—N2—H2C120.0
C12—C7—H7A119.8H2B—N2—H2C120.0
C9—C8—C7120.21 (11)N2—C1—N1118.49 (12)
C9—C8—H8A119.9N2—C1—C2122.93 (11)
C7—C8—H8A119.9N1—C1—C2118.57 (11)
C8—C9—C10118.87 (12)C3—C2—C1120.36 (10)
C8—C9—H9A120.6C3—C2—H2A119.8
C10—C9—H9A120.6C1—C2—H2A119.8
C11—C10—C9121.68 (12)C2—C3—C4118.91 (11)
C11—C10—Cl1119.30 (9)C2—C3—C6120.86 (11)
C9—C10—Cl1119.01 (10)C4—C3—C6120.22 (11)
C10—C11—C12119.26 (11)C5—C4—C3119.42 (11)
C10—C11—H11A120.4C5—C4—H4A120.3
C12—C11—H11A120.4C3—C4—H4A120.3
C11—C12—C7119.63 (12)C4—C5—N1121.04 (11)
C11—C12—C13119.90 (10)C4—C5—H5A119.5
C7—C12—C13120.47 (11)N1—C5—H5A119.5
O2—C13—O1125.07 (12)C3—C6—H6A109.5
O2—C13—C12117.52 (10)C3—C6—H6B109.5
O1—C13—C12117.41 (10)H6A—C6—H6B109.5
C1—N1—C5121.66 (11)C3—C6—H6C109.5
C1—N1—H1A119.2H6A—C6—H6C109.5
C5—N1—H1A119.2H6B—C6—H6C109.5
C12—C7—C8—C9−0.62 (19)C11—C12—C13—O1179.10 (11)
C7—C8—C9—C10−0.5 (2)C7—C12—C13—O10.27 (16)
C8—C9—C10—C110.9 (2)C5—N1—C1—N2178.68 (11)
C8—C9—C10—Cl1−178.18 (10)C5—N1—C1—C2−2.06 (17)
C9—C10—C11—C12−0.32 (18)N2—C1—C2—C3−179.79 (12)
Cl1—C10—C11—C12178.81 (9)N1—C1—C2—C30.98 (17)
C10—C11—C12—C7−0.79 (17)C1—C2—C3—C40.97 (17)
C10—C11—C12—C13−179.62 (10)C1—C2—C3—C6−178.29 (10)
C8—C7—C12—C111.26 (18)C2—C3—C4—C5−1.91 (17)
C8—C7—C12—C13−179.91 (11)C6—C3—C4—C5177.35 (11)
C11—C12—C13—O2−1.50 (17)C3—C4—C5—N10.90 (17)
C7—C12—C13—O2179.67 (11)C1—N1—C5—C41.13 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.861.832.6921 (16)175
N2—H2B···O2i0.861.932.786 (2)177
N2—H2C···O2ii0.861.962.8146 (14)173
C5—H5A···O1iii0.932.503.1707 (13)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.861.832.6921 (16)175
N2—H2B⋯O2i0.861.932.786 (2)177
N2—H2C⋯O2ii0.861.962.8146 (14)173
C5—H5A⋯O1iii0.932.503.1707 (13)129

Symmetry codes: (i) ; (ii) ; (iii) .

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