| Literature DB >> 24046674 |
Abbas Farhadikoutenaei1, Kaliyaperumal Thanigaimani, Suhana Arshad, Ibrahim Abdul Razak.
Abstract
In the 3-hy-droxy-picolinate anion of the title salt, C6H9N2 (+)·C6H4NO3 (-), an intra-molecular O-H⋯O hydrogen bond with an S(6) graph-set motif is formed, so that the anion is essentially planar, with a dihedral angle of 9.55 (9)° between the pyridine ring and the carboxyl-ate group. In the crystal, the cations and anions are linked via N-H⋯O hydrogen bonds, forming a centrosymmetric 2 + 2 aggregate with R 2 (2)(8) and R 4 (2)(8) ring motifs. The crystal structure also features N-H⋯N and weak C-H⋯π inter-actions.Entities:
Year: 2013 PMID: 24046674 PMCID: PMC3770389 DOI: 10.1107/S1600536813016322
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C6H4NO3− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 8234 reflections |
| θ = 2.5–32.6° | |
| µ = 0.11 mm−1 | |
| β = 118.250 (3)° | Block, colourless |
| 0.58 × 0.29 × 0.16 mm | |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 4132 independent reflections |
| Radiation source: fine-focus sealed tube | 3596 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 32.6°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 15996 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4132 reflections | (Δ/σ)max = 0.001 |
| 180 parameters | Δρmax = 0.47 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.38403 (10) | 0.83927 (4) | 0.52572 (6) | 0.02228 (14) | |
| O2 | 0.41088 (9) | 0.89008 (4) | 0.31488 (7) | 0.01954 (13) | |
| O3 | 0.12614 (10) | 0.90599 (4) | 0.10825 (6) | 0.01974 (13) | |
| N1 | −0.10602 (10) | 0.82189 (4) | 0.20289 (7) | 0.01502 (13) | |
| C1 | −0.22027 (12) | 0.78730 (5) | 0.25475 (8) | 0.01684 (14) | |
| H1A | −0.3598 | 0.7738 | 0.1920 | 0.020* | |
| C2 | −0.14303 (13) | 0.77021 (4) | 0.39745 (8) | 0.01669 (14) | |
| H2A | −0.2297 | 0.7465 | 0.4307 | 0.020* | |
| C3 | 0.06046 (13) | 0.78818 (4) | 0.48931 (8) | 0.01635 (14) | |
| H3A | 0.1159 | 0.7773 | 0.5867 | 0.020* | |
| C4 | 0.18388 (12) | 0.82274 (4) | 0.43669 (8) | 0.01437 (14) | |
| C5 | 0.09352 (11) | 0.83951 (4) | 0.29191 (7) | 0.01291 (13) | |
| C6 | 0.21674 (12) | 0.88142 (4) | 0.23125 (8) | 0.01460 (14) | |
| N2 | 0.39598 (10) | 0.50115 (4) | 0.27137 (7) | 0.01444 (13) | |
| N3 | 0.70889 (12) | 0.55236 (5) | 0.44004 (8) | 0.02005 (14) | |
| C7 | 0.50370 (12) | 0.55708 (4) | 0.37131 (8) | 0.01518 (14) | |
| C8 | 0.38865 (14) | 0.61797 (5) | 0.39723 (8) | 0.01833 (15) | |
| H8A | 0.4581 | 0.6590 | 0.4655 | 0.022* | |
| C9 | 0.17762 (14) | 0.61731 (5) | 0.32352 (9) | 0.01811 (15) | |
| H9A | 0.1020 | 0.6576 | 0.3431 | 0.022* | |
| C10 | 0.06826 (12) | 0.55828 (4) | 0.21858 (8) | 0.01489 (14) | |
| C11 | 0.18508 (12) | 0.50126 (4) | 0.19649 (8) | 0.01427 (14) | |
| H11A | 0.1179 | 0.4606 | 0.1272 | 0.017* | |
| C12 | −0.16380 (13) | 0.56034 (5) | 0.13631 (9) | 0.01984 (16) | |
| H12A | −0.2134 | 0.5109 | 0.0793 | 0.030* | |
| H12B | −0.2072 | 0.6082 | 0.0750 | 0.030* | |
| H12C | −0.2220 | 0.5633 | 0.2011 | 0.030* | |
| H2N3 | 0.766 (2) | 0.5071 (9) | 0.4311 (15) | 0.030 (3)* | |
| H1N3 | 0.779 (2) | 0.5866 (8) | 0.5053 (15) | 0.029 (3)* | |
| H1O1 | 0.437 (3) | 0.8585 (12) | 0.469 (2) | 0.058 (5)* | |
| H1N2 | 0.465 (2) | 0.4611 (9) | 0.2494 (15) | 0.036 (4)* |
| O1 | 0.0138 (3) | 0.0296 (3) | 0.0167 (3) | −0.0022 (2) | 0.0017 (2) | 0.0055 (2) |
| O2 | 0.0115 (3) | 0.0238 (3) | 0.0219 (3) | −0.0005 (2) | 0.0067 (2) | 0.0054 (2) |
| O3 | 0.0173 (3) | 0.0264 (3) | 0.0151 (3) | −0.0030 (2) | 0.0073 (2) | 0.0024 (2) |
| N1 | 0.0137 (3) | 0.0162 (3) | 0.0150 (3) | −0.0018 (2) | 0.0067 (2) | −0.0012 (2) |
| C1 | 0.0144 (3) | 0.0181 (3) | 0.0183 (3) | −0.0032 (2) | 0.0080 (3) | −0.0014 (2) |
| C2 | 0.0187 (3) | 0.0156 (3) | 0.0190 (3) | −0.0011 (3) | 0.0116 (3) | 0.0000 (2) |
| C3 | 0.0202 (4) | 0.0150 (3) | 0.0148 (3) | 0.0006 (2) | 0.0090 (3) | 0.0010 (2) |
| C4 | 0.0136 (3) | 0.0139 (3) | 0.0139 (3) | 0.0007 (2) | 0.0050 (3) | 0.0007 (2) |
| C5 | 0.0123 (3) | 0.0130 (3) | 0.0136 (3) | 0.0005 (2) | 0.0063 (3) | 0.0003 (2) |
| C6 | 0.0135 (3) | 0.0148 (3) | 0.0165 (3) | −0.0001 (2) | 0.0079 (3) | −0.0001 (2) |
| N2 | 0.0137 (3) | 0.0146 (3) | 0.0148 (3) | 0.0010 (2) | 0.0066 (2) | −0.0013 (2) |
| N3 | 0.0148 (3) | 0.0217 (3) | 0.0187 (3) | −0.0003 (2) | 0.0039 (3) | −0.0020 (2) |
| C7 | 0.0162 (3) | 0.0151 (3) | 0.0130 (3) | −0.0005 (2) | 0.0058 (3) | 0.0006 (2) |
| C8 | 0.0217 (4) | 0.0153 (3) | 0.0162 (3) | 0.0011 (3) | 0.0076 (3) | −0.0024 (2) |
| C9 | 0.0216 (4) | 0.0155 (3) | 0.0185 (3) | 0.0044 (3) | 0.0105 (3) | 0.0004 (2) |
| C10 | 0.0154 (3) | 0.0150 (3) | 0.0153 (3) | 0.0023 (2) | 0.0082 (3) | 0.0028 (2) |
| C11 | 0.0141 (3) | 0.0147 (3) | 0.0141 (3) | −0.0003 (2) | 0.0067 (3) | −0.0001 (2) |
| C12 | 0.0152 (3) | 0.0223 (3) | 0.0230 (4) | 0.0034 (3) | 0.0098 (3) | 0.0051 (3) |
| O1—C4 | 1.3499 (9) | N2—H1N2 | 0.927 (15) |
| O1—H1O1 | 0.926 (19) | N3—C7 | 1.3301 (10) |
| O2—C6 | 1.2848 (9) | N3—H2N3 | 0.883 (15) |
| O3—C6 | 1.2408 (9) | N3—H1N3 | 0.859 (14) |
| N1—C1 | 1.3372 (10) | C7—C8 | 1.4207 (11) |
| N1—C5 | 1.3502 (10) | C8—C9 | 1.3668 (12) |
| C1—C2 | 1.3989 (11) | C8—H8A | 0.9500 |
| C1—H1A | 0.9500 | C9—C10 | 1.4187 (11) |
| C2—C3 | 1.3793 (11) | C9—H9A | 0.9500 |
| C2—H2A | 0.9500 | C10—C11 | 1.3657 (10) |
| C3—C4 | 1.3990 (11) | C10—C12 | 1.5040 (11) |
| C3—H3A | 0.9500 | C11—H11A | 0.9500 |
| C4—C5 | 1.4098 (10) | C12—H12A | 0.9800 |
| C5—C6 | 1.5122 (10) | C12—H12B | 0.9800 |
| N2—C7 | 1.3529 (10) | C12—H12C | 0.9800 |
| N2—C11 | 1.3666 (10) | ||
| C4—O1—H1O1 | 104.5 (12) | C7—N3—H1N3 | 120.3 (10) |
| C1—N1—C5 | 118.45 (6) | H2N3—N3—H1N3 | 120.5 (13) |
| N1—C1—C2 | 122.80 (7) | N3—C7—N2 | 119.11 (7) |
| N1—C1—H1A | 118.6 | N3—C7—C8 | 123.57 (7) |
| C2—C1—H1A | 118.6 | N2—C7—C8 | 117.32 (7) |
| C3—C2—C1 | 119.19 (7) | C9—C8—C7 | 119.69 (7) |
| C3—C2—H2A | 120.4 | C9—C8—H8A | 120.2 |
| C1—C2—H2A | 120.4 | C7—C8—H8A | 120.2 |
| C2—C3—C4 | 118.90 (7) | C8—C9—C10 | 121.91 (7) |
| C2—C3—H3A | 120.6 | C8—C9—H9A | 119.0 |
| C4—C3—H3A | 120.6 | C10—C9—H9A | 119.0 |
| O1—C4—C3 | 119.18 (7) | C11—C10—C9 | 116.40 (7) |
| O1—C4—C5 | 122.33 (7) | C11—C10—C12 | 122.79 (7) |
| C3—C4—C5 | 118.49 (7) | C9—C10—C12 | 120.80 (7) |
| N1—C5—C4 | 122.15 (7) | C10—C11—N2 | 121.78 (7) |
| N1—C5—C6 | 117.28 (6) | C10—C11—H11A | 119.1 |
| C4—C5—C6 | 120.53 (7) | N2—C11—H11A | 119.1 |
| O3—C6—O2 | 124.93 (7) | C10—C12—H12A | 109.5 |
| O3—C6—C5 | 119.13 (7) | C10—C12—H12B | 109.5 |
| O2—C6—C5 | 115.92 (6) | H12A—C12—H12B | 109.5 |
| C7—N2—C11 | 122.89 (6) | C10—C12—H12C | 109.5 |
| C7—N2—H1N2 | 120.2 (9) | H12A—C12—H12C | 109.5 |
| C11—N2—H1N2 | 116.9 (9) | H12B—C12—H12C | 109.5 |
| C7—N3—H2N3 | 117.5 (9) | ||
| C5—N1—C1—C2 | 1.36 (11) | N1—C5—C6—O2 | −173.26 (6) |
| N1—C1—C2—C3 | −1.19 (12) | C4—C5—C6—O2 | 9.01 (10) |
| C1—C2—C3—C4 | −0.26 (11) | C11—N2—C7—N3 | 179.59 (7) |
| C2—C3—C4—O1 | −178.95 (7) | C11—N2—C7—C8 | −0.11 (11) |
| C2—C3—C4—C5 | 1.41 (11) | N3—C7—C8—C9 | −178.71 (7) |
| C1—N1—C5—C4 | −0.11 (11) | N2—C7—C8—C9 | 0.97 (11) |
| C1—N1—C5—C6 | −177.80 (6) | C7—C8—C9—C10 | −1.42 (12) |
| O1—C4—C5—N1 | 179.10 (7) | C8—C9—C10—C11 | 0.95 (11) |
| C3—C4—C5—N1 | −1.28 (11) | C8—C9—C10—C12 | −178.32 (7) |
| O1—C4—C5—C6 | −3.29 (11) | C9—C10—C11—N2 | −0.06 (11) |
| C3—C4—C5—C6 | 176.34 (6) | C12—C10—C11—N2 | 179.19 (6) |
| N1—C5—C6—O3 | 8.08 (10) | C7—N2—C11—C10 | −0.35 (11) |
| C4—C5—C6—O3 | −169.65 (7) |
| H··· | ||||
| O1—H1 | 0.93 (2) | 1.66 (2) | 2.5239 (10) | 152 (2) |
| N3—H2 | 0.885 (15) | 1.969 (15) | 2.8504 (11) | 174.0 (14) |
| N3—H1 | 0.859 (14) | 2.248 (15) | 2.8093 (10) | 123.0 (12) |
| N3—H1 | 0.859 (14) | 2.416 (14) | 3.2481 (10) | 163.2 (13) |
| N2—H1 | 0.943 (16) | 1.796 (16) | 2.7327 (10) | 171.4 (13) |
| C9—H9 | 0.95 | 2.59 | 3.4702 (10) | 154 |
| C11—H11 | 0.95 | 2.71 | 3.3956 (8) | 130 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the N1/C1–C5 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.93 (2) | 1.66 (2) | 2.5239 (10) | 152 (2) |
| N3—H2 | 0.885 (15) | 1.969 (15) | 2.8504 (11) | 174.0 (14) |
| N3—H1 | 0.859 (14) | 2.248 (15) | 2.8093 (10) | 123.0 (12) |
| N3—H1 | 0.859 (14) | 2.416 (14) | 3.2481 (10) | 163.2 (13) |
| N2—H1 | 0.943 (16) | 1.796 (16) | 2.7327 (10) | 171.4 (13) |
| C9—H9 | 0.95 | 2.59 | 3.4702 (10) | 154 |
| C11—H11 | 0.95 | 2.71 | 3.3956 (8) | 130 |
Symmetry codes: (i) ; (ii) ; (iii) .