Literature DB >> 23476276

6-Methyl-pyridin-2-amine.

Sergiu Draguta1, Victor N Khrustalev, Bhupinder Sandhu, Mikhail Yu Antipin, Tatiana V Timofeeva.   

Abstract

In the title mol-ecule, C6H8N2, the endocyclic angles are in the range 118.43 (9)-122.65 (10)°. The mol-ecular skeleton is planar (r.m.s. deviation = 0.007 Å). One of the two amino H atoms is involved in an N-H⋯N hydrogen bond, forming an inversion dimer, while the other amino H atom participates in N-H⋯π inter-actions between the dimers, forming layers parallel to (100).

Entities:  

Year:  2012        PMID: 23476276      PMCID: PMC3589040          DOI: 10.1107/S1600536812047800

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the design of chiral or acentric co-crystals, see: Jacques et al. (1981 ▶); Miyata (1991 ▶); Scheiner (1997 ▶). For related compounds, see: Büyükgüngör & Odabaşoğlu (2006 ▶); Chtioui & Jouini (2006 ▶); Ni et al. (2007 ▶); Dai et al. (2011 ▶); Waddell et al. (2011 ▶).

Experimental

Crystal data

C6H8N2 M = 108.14 Monoclinic, a = 9.1006 (11) Å b = 6.2458 (8) Å c = 10.5598 (13) Å β = 100.952 (2)° V = 589.29 (13) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.977, T max = 0.985 5852 measured reflections 1420 independent reflections 1196 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.130 S = 1.00 1420 reflections 82 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812047800/cv5366sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812047800/cv5366Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812047800/cv5366Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H8N2F(000) = 232
Mr = 108.14Dx = 1.219 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2436 reflections
a = 9.1006 (11) Åθ = 2.3–30.0°
b = 6.2458 (8) ŵ = 0.08 mm1
c = 10.5598 (13) ÅT = 296 K
β = 100.952 (2)°Prism, colourless
V = 589.29 (13) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker APEXII CCD diffractometer1420 independent reflections
Radiation source: fine-focus sealed tube1196 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
φ and ω scansθmax = 28.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −12→12
Tmin = 0.977, Tmax = 0.985k = −8→8
5852 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: difference Fourier map
wR(F2) = 0.130H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.082P)2 + 0.126P] where P = (Fo2 + 2Fc2)/3
1420 reflections(Δ/σ)max < 0.001
82 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.17331 (10)0.50475 (14)0.92049 (8)0.0227 (3)
N2−0.00315 (12)0.77129 (17)0.90952 (10)0.0311 (3)
H2A−0.0502 (18)0.693 (3)0.9607 (16)0.040 (4)*
H2B−0.0533 (18)0.877 (3)0.8697 (15)0.038 (4)*
C20.11252 (12)0.68485 (17)0.86263 (10)0.0234 (3)
C30.16561 (13)0.77898 (18)0.75860 (11)0.0271 (3)
H30.12190.90290.71960.033*
C40.28303 (13)0.68378 (19)0.71621 (10)0.0281 (3)
H40.31910.74190.64700.034*
C50.34831 (12)0.49983 (18)0.77700 (10)0.0267 (3)
H50.42910.43490.75000.032*
C60.29036 (12)0.41577 (17)0.87838 (10)0.0234 (3)
C70.35535 (13)0.21888 (19)0.94938 (11)0.0307 (3)
H7A0.41720.25971.02980.046*
H7B0.41460.14290.89800.046*
H7C0.27580.12820.96560.046*
U11U22U33U12U13U23
N10.0270 (5)0.0204 (4)0.0207 (4)0.0013 (3)0.0052 (3)−0.0013 (3)
N20.0372 (6)0.0251 (5)0.0331 (5)0.0101 (4)0.0122 (4)0.0046 (4)
C20.0256 (5)0.0207 (5)0.0233 (5)−0.0009 (4)0.0029 (4)−0.0030 (4)
C30.0292 (6)0.0236 (5)0.0271 (5)−0.0005 (4)0.0018 (4)0.0045 (4)
C40.0271 (6)0.0331 (6)0.0240 (5)−0.0056 (4)0.0047 (4)0.0045 (4)
C50.0243 (5)0.0315 (6)0.0251 (5)0.0014 (4)0.0065 (4)−0.0009 (4)
C60.0254 (5)0.0225 (5)0.0218 (5)0.0002 (4)0.0031 (4)−0.0027 (4)
C70.0351 (6)0.0269 (6)0.0316 (6)0.0078 (5)0.0098 (5)0.0031 (4)
N1—C21.3476 (14)C4—C51.3929 (16)
N1—C61.3496 (13)C4—H40.9300
N2—C21.3575 (14)C5—C61.3837 (15)
N2—H2A0.896 (17)C5—H50.9300
N2—H2B0.867 (17)C6—C71.5019 (15)
C2—C31.4099 (15)C7—H7A0.9600
C3—C41.3702 (16)C7—H7B0.9600
C3—H30.9300C7—H7C0.9600
C2—N1—C6118.43 (9)C6—C5—C4118.53 (10)
C2—N2—H2A119.7 (10)C6—C5—H5120.7
C2—N2—H2B120.1 (10)C4—C5—H5120.7
H2A—N2—H2B116.2 (14)N1—C6—C5122.65 (10)
N1—C2—N2116.52 (10)N1—C6—C7115.68 (9)
N1—C2—C3121.96 (10)C5—C6—C7121.67 (10)
N2—C2—C3121.51 (10)C6—C7—H7A109.5
C4—C3—C2118.53 (10)C6—C7—H7B109.5
C4—C3—H3120.7H7A—C7—H7B109.5
C2—C3—H3120.7C6—C7—H7C109.5
C3—C4—C5119.88 (10)H7A—C7—H7C109.5
C3—C4—H4120.1H7B—C7—H7C109.5
C5—C4—H4120.1
C6—N1—C2—N2−178.81 (9)C3—C4—C5—C61.01 (17)
C6—N1—C2—C31.34 (15)C2—N1—C6—C5−1.20 (16)
N1—C2—C3—C4−0.31 (17)C2—N1—C6—C7178.40 (9)
N2—C2—C3—C4179.84 (10)C4—C5—C6—N10.04 (17)
C2—C3—C4—C5−0.88 (17)C4—C5—C6—C7−179.54 (10)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N1i0.896 (17)2.211 (17)3.1062 (14)177.5 (11)
N2—H2B···Cgii0.867 (17)2.674 (16)3.4875 (12)163.5 (11)
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the N1/C2–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯N1i 0.896 (17)2.211 (17)3.1062 (14)177.5 (11)
N2—H2BCg ii 0.867 (17)2.674 (16)3.4875 (12)163.5 (11)

Symmetry codes: (i) ; (ii) .

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