| Literature DB >> 23476276 |
Sergiu Draguta1, Victor N Khrustalev, Bhupinder Sandhu, Mikhail Yu Antipin, Tatiana V Timofeeva.
Abstract
In the title mol-ecule, C6H8N2, the endocyclic angles are in the range 118.43 (9)-122.65 (10)°. The mol-ecular skeleton is planar (r.m.s. deviation = 0.007 Å). One of the two amino H atoms is involved in an N-H⋯N hydrogen bond, forming an inversion dimer, while the other amino H atom participates in N-H⋯π inter-actions between the dimers, forming layers parallel to (100).Entities:
Year: 2012 PMID: 23476276 PMCID: PMC3589040 DOI: 10.1107/S1600536812047800
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H8N2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2436 reflections |
| θ = 2.3–30.0° | |
| µ = 0.08 mm−1 | |
| β = 100.952 (2)° | Prism, colourless |
| 0.30 × 0.25 × 0.20 mm | |
| Bruker APEXII CCD diffractometer | 1420 independent reflections |
| Radiation source: fine-focus sealed tube | 1196 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 5852 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1420 reflections | (Δ/σ)max < 0.001 |
| 82 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.16 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.17331 (10) | 0.50475 (14) | 0.92049 (8) | 0.0227 (3) | |
| N2 | −0.00315 (12) | 0.77129 (17) | 0.90952 (10) | 0.0311 (3) | |
| H2A | −0.0502 (18) | 0.693 (3) | 0.9607 (16) | 0.040 (4)* | |
| H2B | −0.0533 (18) | 0.877 (3) | 0.8697 (15) | 0.038 (4)* | |
| C2 | 0.11252 (12) | 0.68485 (17) | 0.86263 (10) | 0.0234 (3) | |
| C3 | 0.16561 (13) | 0.77898 (18) | 0.75860 (11) | 0.0271 (3) | |
| H3 | 0.1219 | 0.9029 | 0.7196 | 0.033* | |
| C4 | 0.28303 (13) | 0.68378 (19) | 0.71621 (10) | 0.0281 (3) | |
| H4 | 0.3191 | 0.7419 | 0.6470 | 0.034* | |
| C5 | 0.34831 (12) | 0.49983 (18) | 0.77700 (10) | 0.0267 (3) | |
| H5 | 0.4291 | 0.4349 | 0.7500 | 0.032* | |
| C6 | 0.29036 (12) | 0.41577 (17) | 0.87838 (10) | 0.0234 (3) | |
| C7 | 0.35535 (13) | 0.21888 (19) | 0.94938 (11) | 0.0307 (3) | |
| H7A | 0.4172 | 0.2597 | 1.0298 | 0.046* | |
| H7B | 0.4146 | 0.1429 | 0.8980 | 0.046* | |
| H7C | 0.2758 | 0.1282 | 0.9656 | 0.046* |
| N1 | 0.0270 (5) | 0.0204 (4) | 0.0207 (4) | 0.0013 (3) | 0.0052 (3) | −0.0013 (3) |
| N2 | 0.0372 (6) | 0.0251 (5) | 0.0331 (5) | 0.0101 (4) | 0.0122 (4) | 0.0046 (4) |
| C2 | 0.0256 (5) | 0.0207 (5) | 0.0233 (5) | −0.0009 (4) | 0.0029 (4) | −0.0030 (4) |
| C3 | 0.0292 (6) | 0.0236 (5) | 0.0271 (5) | −0.0005 (4) | 0.0018 (4) | 0.0045 (4) |
| C4 | 0.0271 (6) | 0.0331 (6) | 0.0240 (5) | −0.0056 (4) | 0.0047 (4) | 0.0045 (4) |
| C5 | 0.0243 (5) | 0.0315 (6) | 0.0251 (5) | 0.0014 (4) | 0.0065 (4) | −0.0009 (4) |
| C6 | 0.0254 (5) | 0.0225 (5) | 0.0218 (5) | 0.0002 (4) | 0.0031 (4) | −0.0027 (4) |
| C7 | 0.0351 (6) | 0.0269 (6) | 0.0316 (6) | 0.0078 (5) | 0.0098 (5) | 0.0031 (4) |
| N1—C2 | 1.3476 (14) | C4—C5 | 1.3929 (16) |
| N1—C6 | 1.3496 (13) | C4—H4 | 0.9300 |
| N2—C2 | 1.3575 (14) | C5—C6 | 1.3837 (15) |
| N2—H2A | 0.896 (17) | C5—H5 | 0.9300 |
| N2—H2B | 0.867 (17) | C6—C7 | 1.5019 (15) |
| C2—C3 | 1.4099 (15) | C7—H7A | 0.9600 |
| C3—C4 | 1.3702 (16) | C7—H7B | 0.9600 |
| C3—H3 | 0.9300 | C7—H7C | 0.9600 |
| C2—N1—C6 | 118.43 (9) | C6—C5—C4 | 118.53 (10) |
| C2—N2—H2A | 119.7 (10) | C6—C5—H5 | 120.7 |
| C2—N2—H2B | 120.1 (10) | C4—C5—H5 | 120.7 |
| H2A—N2—H2B | 116.2 (14) | N1—C6—C5 | 122.65 (10) |
| N1—C2—N2 | 116.52 (10) | N1—C6—C7 | 115.68 (9) |
| N1—C2—C3 | 121.96 (10) | C5—C6—C7 | 121.67 (10) |
| N2—C2—C3 | 121.51 (10) | C6—C7—H7A | 109.5 |
| C4—C3—C2 | 118.53 (10) | C6—C7—H7B | 109.5 |
| C4—C3—H3 | 120.7 | H7A—C7—H7B | 109.5 |
| C2—C3—H3 | 120.7 | C6—C7—H7C | 109.5 |
| C3—C4—C5 | 119.88 (10) | H7A—C7—H7C | 109.5 |
| C3—C4—H4 | 120.1 | H7B—C7—H7C | 109.5 |
| C5—C4—H4 | 120.1 | ||
| C6—N1—C2—N2 | −178.81 (9) | C3—C4—C5—C6 | 1.01 (17) |
| C6—N1—C2—C3 | 1.34 (15) | C2—N1—C6—C5 | −1.20 (16) |
| N1—C2—C3—C4 | −0.31 (17) | C2—N1—C6—C7 | 178.40 (9) |
| N2—C2—C3—C4 | 179.84 (10) | C4—C5—C6—N1 | 0.04 (17) |
| C2—C3—C4—C5 | −0.88 (17) | C4—C5—C6—C7 | −179.54 (10) |
| H··· | ||||
| N2—H2 | 0.896 (17) | 2.211 (17) | 3.1062 (14) | 177.5 (11) |
| N2—H2 | 0.867 (17) | 2.674 (16) | 3.4875 (12) | 163.5 (11) |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the N1/C2–C6 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.896 (17) | 2.211 (17) | 3.1062 (14) | 177.5 (11) |
| N2—H2 | 0.867 (17) | 2.674 (16) | 3.4875 (12) | 163.5 (11) |
Symmetry codes: (i) ; (ii) .