Literature DB >> 23440085

Synthesis of libraries of peptidomimetic compounds containing a 2-oxopiperazine unit in the main chain.

Sujit Suwal1, Thomas Kodadek.   

Abstract

Peptoid libraries have been shown to be a useful source of protein-binding agents. However, simple linear peptoids lack conformational constraints, which may limit their binding affinity for proteins. Here we report facile chemistry for the assembly of 2-oxopiperazine rings into the main chain of peptoid-like oligomers, thus rigidifying the structure. This modified sub-monomer synthesis is suitable for the creation of high quality combinatorial libraries.

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Year:  2013        PMID: 23440085      PMCID: PMC4194856          DOI: 10.1039/c3ob27476d

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  23 in total

1.  Identification from a positional scanning peptoid library of in vivo active compounds that neutralize bacterial endotoxins.

Authors:  Puig Mora; Isabel Masip; Nuria Cortés; Regina Marquina; Ramón Merino; Jesús Merino; Teresa Carbonell; Ismael Mingarro; Angel Messeguer; Enrique Pérez-Payá
Journal:  J Med Chem       Date:  2005-02-24       Impact factor: 7.446

2.  A high-throughput assay for assessing the cell permeability of combinatorial libraries.

Authors:  Peng Yu; Bo Liu; Thomas Kodadek
Journal:  Nat Biotechnol       Date:  2005-05-22       Impact factor: 54.908

3.  A cell-permeable synthetic transcription factor mimic.

Authors:  Xiangshu Xiao; Peng Yu; Hyun-Suk Lim; Devanjan Sikder; Thomas Kodadek
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

4.  Identification of a peptoid inhibitor of the proteasome 19S regulatory particle.

Authors:  Hyun-Suk Lim; Chase T Archer; Thomas Kodadek
Journal:  J Am Chem Soc       Date:  2007-05-31       Impact factor: 15.419

5.  Quantitative evaluation of the relative cell permeability of peptoids and peptides.

Authors:  Yong-Uk Kwon; Thomas Kodadek
Journal:  J Am Chem Soc       Date:  2007-02-14       Impact factor: 15.419

Review 6.  Peptoid architectures: elaboration, actuation, and application.

Authors:  Barney Yoo; Kent Kirshenbaum
Journal:  Curr Opin Chem Biol       Date:  2008-09-09       Impact factor: 8.822

7.  Synthesis of N-substituted glycine peptoid libraries.

Authors:  G M Figliozzi; R Goldsmith; S C Ng; S C Banville; R N Zuckermann
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

8.  Smallest peptoids with antiproliferative activity on human neoplastic cells.

Authors:  Carlos Mas-Moruno; Luis J Cruz; Puig Mora; Andrés Francesch; Angel Messeguer; Enrique Pérez-Paya; Fernando Albericio
Journal:  J Med Chem       Date:  2007-04-14       Impact factor: 7.446

9.  A peptoid "antibody surrogate" that antagonizes VEGF receptor 2 activity.

Authors:  D Gomika Udugamasooriya; Sean P Dineen; Rolf A Brekken; Thomas Kodadek
Journal:  J Am Chem Soc       Date:  2008-04-02       Impact factor: 15.419

Review 10.  Structure-function relationships in peptoids: recent advances toward deciphering the structural requirements for biological function.

Authors:  Sarah A Fowler; Helen E Blackwell
Journal:  Org Biomol Chem       Date:  2009-02-11       Impact factor: 3.876

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  14 in total

1.  Solid-Phase Synthesis of β-Amino Ketones Via DNA-Compatible Organocatalytic Mannich Reactions.

Authors:  Nam Tran-Hoang; Thomas Kodadek
Journal:  ACS Comb Sci       Date:  2018-01-24       Impact factor: 3.784

Review 2.  Chemical tools to monitor and manipulate the adaptive immune system.

Authors:  Thomas Kodadek
Journal:  Chem Biol       Date:  2014-09-18

3.  Reliable diagnosis of murine type 1 diabetes using a panel of autoantigens and "antigen surrogates" mounted onto a liquid array.

Authors:  Todd M Doran; Jumpei Morimoto; Scott Simanski; Patrick J McEnaney; Thomas Kodadek
Journal:  Mol Biosyst       Date:  2015-11

4.  Enantioselective synthesis of α-secondary and α-tertiary piperazin-2-ones and piperazines by catalytic asymmetric allylic alkylation.

Authors:  Katerina M Korch; Christian Eidamshaus; Douglas C Behenna; Sangkil Nam; David Horne; Brian M Stoltz
Journal:  Angew Chem Int Ed Engl       Date:  2014-11-07       Impact factor: 15.336

5.  High affinity binding of conformationally constrained synthetic oligomers to an antigen-specific antibody: Discovery of a diagnostically useful synthetic ligand for murine Type 1 diabetes autoantibodies.

Authors:  Todd M Doran; Yu Gao; Scott Simanski; Patrick McEnaney; Thomas Kodadek
Journal:  Bioorg Med Chem Lett       Date:  2015-05-27       Impact factor: 2.823

6.  Solid phase synthesis of 1,3,4-oxadiazin-5 (6R)-one and 1,3,4-oxadiazol-2-one scaffolds from acyl hydrazides.

Authors:  Bani Kanta Sarma; Xiaodan Liu; Hao Wu; Yu Gao; Thomas Kodadek
Journal:  Org Biomol Chem       Date:  2015-01-07       Impact factor: 3.876

7.  Recognition of antigen-specific B-cell receptors from chronic lymphocytic leukemia patients by synthetic antigen surrogates.

Authors:  Mohosin Sarkar; Yun Liu; Jumpei Morimoto; Haiyong Peng; Claudio Aquino; Christoph Rader; Nicholas Chiorazzi; Thomas Kodadek
Journal:  Chem Biol       Date:  2014-11-26

8.  Towards vast libraries of scaffold-diverse, conformationally constrained oligomers.

Authors:  Thomas Kodadek; Patrick J McEnaney
Journal:  Chem Commun (Camb)       Date:  2016-03-21       Impact factor: 6.222

Review 9.  Chemical Tools To Monitor and Manipulate Adaptive Immune Responses.

Authors:  Todd M Doran; Mohosin Sarkar; Thomas Kodadek
Journal:  J Am Chem Soc       Date:  2016-05-03       Impact factor: 15.419

10.  Solid-phase synthesis of peptoid-like oligomers containing diverse diketopiperazine units.

Authors:  Sujit Suwal; Thomas Kodadek
Journal:  Org Biomol Chem       Date:  2014-08-21       Impact factor: 3.876

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