Literature DB >> 26996593

Towards vast libraries of scaffold-diverse, conformationally constrained oligomers.

Thomas Kodadek1, Patrick J McEnaney.   

Abstract

There is great interest in the development of probe molecules and drug leads that would bind tightly and selectively to protein surfaces that are difficult to target with traditional molecules, such as those involved in protein-protein interactions. The currently available evidence suggests that this will require molecules that are larger and have quite different chemical properties than typical Lipinski-compliant molecules that target enzyme active sites. We describe here efforts to develop vast libraries of conformationally constrained oligomers as a potentially rich source of these molecules.

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Year:  2016        PMID: 26996593      PMCID: PMC4846527          DOI: 10.1039/c6cc00617e

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  115 in total

Review 1.  Target-oriented and diversity-oriented organic synthesis in drug discovery.

Authors:  S L Schreiber
Journal:  Science       Date:  2000-03-17       Impact factor: 47.728

Review 2.  Selecting chemicals: the emerging utility of DNA-encoded libraries.

Authors:  Matthew A Clark
Journal:  Curr Opin Chem Biol       Date:  2010-03-26       Impact factor: 8.822

3.  A new type of synthetic peptide library for identifying ligand-binding activity.

Authors:  K S Lam; S E Salmon; E M Hersh; V J Hruby; W M Kazmierski; R J Knapp
Journal:  Nature       Date:  1991-11-07       Impact factor: 49.962

4.  Complex synthetic chemical libraries indexed with molecular tags.

Authors:  M H Ohlmeyer; R N Swanson; L W Dillard; J C Reader; G Asouline; R Kobayashi; M Wigler; W C Still
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-01       Impact factor: 11.205

5.  Chiral N-substituted glycines can form stable helical conformations.

Authors:  P Armand; K Kirshenbaum; A Falicov; R L Dunbrack; K A Dill; R N Zuckermann; F E Cohen
Journal:  Fold Des       Date:  1997

6.  Discovery of nanomolar ligands for 7-transmembrane G-protein-coupled receptors from a diverse N-(substituted)glycine peptoid library.

Authors:  R N Zuckermann; E J Martin; D C Spellmeyer; G B Stauber; K R Shoemaker; J M Kerr; G M Figliozzi; D A Goff; M A Siani; R J Simon
Journal:  J Med Chem       Date:  1994-08-19       Impact factor: 7.446

7.  The 19S regulatory particle of the proteasome is required for efficient transcription elongation by RNA polymerase II.

Authors:  A Ferdous; F Gonzalez; L Sun; T Kodadek; S A Johnston
Journal:  Mol Cell       Date:  2001-05       Impact factor: 17.970

8.  Selective toxin sequestrants for the treatment of bacterial infections.

Authors:  Levi S Simpson; Lyle Burdine; Amal K Dutta; Andrew P Feranchak; Thomas Kodadek
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

9.  Beta-peptidic peptidomimetics.

Authors:  Dieter Seebach; James Gardiner
Journal:  Acc Chem Res       Date:  2008-06-26       Impact factor: 22.384

10.  Design and synthesis of a cell-permeable synthetic transcription factor mimic.

Authors:  Xiangshu Xiao; Peng Yu; Hyun-Suk Lim; Devanjan Sikder; Thomas Kodadek
Journal:  J Comb Chem       Date:  2007-05-27
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  15 in total

1.  Solid-Phase Synthesis of β-Amino Ketones Via DNA-Compatible Organocatalytic Mannich Reactions.

Authors:  Nam Tran-Hoang; Thomas Kodadek
Journal:  ACS Comb Sci       Date:  2018-01-24       Impact factor: 3.784

2.  Asymmetric synthesis of vinylogous β-amino acids and their incorporation into mixed backbone oligomers.

Authors:  Hao Wu; Hongchan An; Shuting Cynthia Mo; Thomas Kodadek
Journal:  Org Biomol Chem       Date:  2017-04-11       Impact factor: 3.876

3.  Developments with bead-based screening for novel drug discovery.

Authors:  Dehua Pei; George Appiah Kubi
Journal:  Expert Opin Drug Discov       Date:  2019-07-23       Impact factor: 6.098

Review 4.  Chemical composition of DNA-encoded libraries, past present and future.

Authors:  Paige Dickson; Thomas Kodadek
Journal:  Org Biomol Chem       Date:  2019-05-15       Impact factor: 3.876

5.  Screening one bead one compound libraries against serum using a flow cytometer: Determination of the minimum antibody concentration required for ligand discovery.

Authors:  Osayemwenre Erharuyi; Scott Simanski; Patrick J McEnaney; Thomas Kodadek
Journal:  Bioorg Med Chem Lett       Date:  2018-01-31       Impact factor: 2.823

6.  Tuning conformation and properties of peptidomimetic backbones through dual N/Cα-substitution.

Authors:  R Kaminker; I Kaminker; W R Gutekunst; Y Luo; S Lee; J Niu; S Han; C J Hawker
Journal:  Chem Commun (Camb)       Date:  2018-05-17       Impact factor: 6.222

7.  A synthetic mimic of phosphodiesterase type 5 based on corona phase molecular recognition of single-walled carbon nanotubes.

Authors:  Juyao Dong; Michael A Lee; Ananth Govind Rajan; Imon Rahaman; Jessica H Sun; Minkyung Park; Daniel P Salem; Michael S Strano
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-14       Impact factor: 11.205

Review 8.  Chemical Tools To Monitor and Manipulate Adaptive Immune Responses.

Authors:  Todd M Doran; Mohosin Sarkar; Thomas Kodadek
Journal:  J Am Chem Soc       Date:  2016-05-03       Impact factor: 15.419

9.  Structural characterization of a peptoid-inspired conformationally constrained oligomer (PICCO) bound to streptavidin.

Authors:  Patrick McEnaney; Madeline Balzarini; Hajeung Park; Thomas Kodadek
Journal:  Chem Commun (Camb)       Date:  2020-08-12       Impact factor: 6.222

10.  Chiral figure-eight molecular scaffold for fluorescent probe development.

Authors:  Cynthia L Schreiber; Canjia Zhai; Bradley D Smith
Journal:  Org Biomol Chem       Date:  2021-03-24       Impact factor: 3.876

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