Literature DB >> 23435123

Marker-free dual-axis tilt series alignment.

Hanspeter Winkler1, Kenneth A Taylor.   

Abstract

Dual-axis tilt series in electron tomography are collected by successively tilting the object about two approximately orthogonal tilt axes. Here we report on the extension of marker-free image registration based on cross-correlation techniques to dual-axis tilt series. A simultaneous geometry refinement yields accurate parameters for the computation of the final reconstruction. Both, image registration and 3D-reconstruction operate on the combined data from the paired single axis series rather than computing individual single axis tomograms followed by a separate combination step. We show that with simultaneous registration and reconstruction of dual-axis tilt series, tomograms with higher resolution are obtained than by merging separately computed tomograms.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23435123      PMCID: PMC4098971          DOI: 10.1016/j.jsb.2013.02.004

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  19 in total

1.  Identification of macromolecular complexes in cryoelectron tomograms of phantom cells.

Authors:  Achilleas S Frangakis; Jochen Böhm; Friedrich Förster; Stephan Nickell; Daniela Nicastro; Dieter Typke; Reiner Hegerl; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-21       Impact factor: 11.205

2.  Dual-axis electron tomography of biological specimens: Extending the limits of specimen thickness with bright-field STEM imaging.

Authors:  Alioscka A Sousa; Afrouz A Azari; Guofeng Zhang; Richard D Leapman
Journal:  J Struct Biol       Date:  2010-11-03       Impact factor: 2.867

3.  Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography.

Authors:  Hanspeter Winkler; Kenneth A Taylor
Journal:  Ultramicroscopy       Date:  2005-08-09       Impact factor: 2.689

4.  A novel dual-axis iterative algorithm for electron tomography.

Authors:  Jenna Tong; Ilke Arslan; Paul Midgley
Journal:  J Struct Biol       Date:  2005-11-28       Impact factor: 2.867

5.  Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis.

Authors:  Daniel Castaño Díez; Anja Seybert; Achilleas S Frangakis
Journal:  J Struct Biol       Date:  2006-01-26       Impact factor: 2.867

6.  Dual-axis tomography: an approach with alignment methods that preserve resolution.

Authors:  D N Mastronarde
Journal:  J Struct Biol       Date:  1997-12       Impact factor: 2.867

7.  The use of electron tomography for structural analysis of disordered protein arrays.

Authors:  K A Taylor; J Tang; Y Cheng; H Winkler
Journal:  J Struct Biol       Date:  1997-12       Impact factor: 2.867

8.  Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography.

Authors:  Friedrich Förster; Ohad Medalia; Nathan Zauberman; Wolfgang Baumeister; Deborah Fass
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-17       Impact factor: 11.205

9.  Double-tilt electron tomography.

Authors:  P Penczek; M Marko; K Buttle; J Frank
Journal:  Ultramicroscopy       Date:  1995-10       Impact factor: 2.689

10.  Three-dimensional reconstruction of imperfect two-dimensional crystals.

Authors:  W O Saxton; W Baumeister; M Hahn
Journal:  Ultramicroscopy       Date:  1984       Impact factor: 2.689

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  7 in total

Review 1.  Resolving presynaptic structure by electron tomography.

Authors:  Guy A Perkins; Dakota R Jackson; George A Spirou
Journal:  Synapse       Date:  2015-03-09       Impact factor: 2.562

2.  Novel Sulfolobus Virus with an Exceptional Capsid Architecture.

Authors:  Haina Wang; Zhenqian Guo; Hongli Feng; Yufei Chen; Xiuqiang Chen; Zhimeng Li; Walter Hernández-Ascencio; Xin Dai; Zhenfeng Zhang; Xiaowei Zheng; Marielos Mora-López; Yu Fu; Chuanlun Zhang; Ping Zhu; Li Huang
Journal:  J Virol       Date:  2018-02-12       Impact factor: 5.103

3.  Automated batch fiducial-less tilt-series alignment in Appion using Protomo.

Authors:  Alex J Noble; Scott M Stagg
Journal:  J Struct Biol       Date:  2015-10-09       Impact factor: 2.867

4.  AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction.

Authors:  Renmin Han; Xiaohua Wan; Lun Li; Albert Lawrence; Peng Yang; Yu Li; Sheng Wang; Fei Sun; Zhiyong Liu; Xin Gao; Fa Zhang
Journal:  Bioinformatics       Date:  2019-01-15       Impact factor: 6.937

5.  A joint method for marker-free alignment of tilt series in electron tomography.

Authors:  Renmin Han; Zhipeng Bao; Xiangrui Zeng; Tongxin Niu; Fa Zhang; Min Xu; Xin Gao
Journal:  Bioinformatics       Date:  2019-07-15       Impact factor: 6.937

Review 6.  Quantitative Cryo-Electron Tomography.

Authors:  Paula P Navarro
Journal:  Front Mol Biosci       Date:  2022-07-06

7.  A fast fiducial marker tracking model for fully automatic alignment in electron tomography.

Authors:  Renmin Han; Fa Zhang; Xin Gao
Journal:  Bioinformatics       Date:  2018-03-01       Impact factor: 6.937

  7 in total

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