Literature DB >> 21055473

Dual-axis electron tomography of biological specimens: Extending the limits of specimen thickness with bright-field STEM imaging.

Alioscka A Sousa1, Afrouz A Azari, Guofeng Zhang, Richard D Leapman.   

Abstract

The absence of imaging lenses after the specimen in the scanning transmission electron microscope (STEM) enables electron tomography to be performed in the STEM mode on micrometer-thick plastic-embedded specimens without the deleterious effect of chromatic aberration, which limits spatial resolution and signal-to-noise ratio in conventional TEM. Using Monte Carlo calculations to simulate electron scattering from gold nanoparticles situated at the top and bottom surfaces of a plastic section, we assess the optimal acquisition strategy for axial bright-field STEM electron tomography at a beam-energy of 300keV. Dual tilt-axis STEM tomography with optimized axial bight-field detector geometry is demonstrated by application to micrometer-thick sections of beta cells from mouse pancreatic islet. The quality of the resulting three-dimensional reconstructions is comparable to that obtained from much thinner (0.3-micrometer) sections using conventional TEM tomography. The increased range of specimen thickness accessible to axial STEM tomography without the need for serial sectioning enables the 3-D visualization of more complex and larger subcellular structures. Published by Elsevier Inc.

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Year:  2010        PMID: 21055473      PMCID: PMC3056916          DOI: 10.1016/j.jsb.2010.10.017

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  23 in total

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Journal:  J Electron Microsc (Tokyo)       Date:  2010-06-29

2.  Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement.

Authors:  James C Bouwer; Mason R Mackey; Albert Lawrence; Tom J Deerinck; Ying Z Jones; Masako Terada; Maryann E Martone; Steven Peltier; Mark H Ellisman
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Review 3.  Visualizing cells at the nanoscale.

Authors:  Andrew Leis; Beate Rockel; Lars Andrees; Wolfgang Baumeister
Journal:  Trends Biochem Sci       Date:  2008-12-26       Impact factor: 13.807

4.  Electron tomography on micrometer-thick specimens with nanometer resolution.

Authors:  J Loos; E Sourty; K Lu; B Freitag; D Tang; D Wall
Journal:  Nano Lett       Date:  2009-04       Impact factor: 11.189

5.  Electron microscopy of whole cells in liquid with nanometer resolution.

Authors:  N de Jonge; D B Peckys; G J Kremers; D W Piston
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-21       Impact factor: 11.205

6.  Focused ion beam (FIB)/scanning electron microscopy (SEM) in tissue structural research.

Authors:  Vladka Leser; Marziale Milani; Francesco Tatti; Ziva Pipan Tkalec; Jasna Strus; Damjana Drobne
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7.  Membrane domains and flagellar pocket boundaries are influenced by the cytoskeleton in African trypanosomes.

Authors:  Catarina Gadelha; Stephen Rothery; Mary Morphew; J Richard McIntosh; Nicholas J Severs; Keith Gull
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-01       Impact factor: 11.205

Review 8.  Probing the macromolecular organization of cells by electron tomography.

Authors:  Andreas Hoenger; J Richard McIntosh
Journal:  Curr Opin Cell Biol       Date:  2009-02       Impact factor: 8.382

9.  Monte Carlo electron-trajectory simulations in bright-field and dark-field STEM: implications for tomography of thick biological sections.

Authors:  A A Sousa; M F Hohmann-Marriott; G Zhang; R D Leapman
Journal:  Ultramicroscopy       Date:  2008-10-25       Impact factor: 2.689

Review 10.  Electron tomography in life science.

Authors:  Montserrat Bárcena; Abraham J Koster
Journal:  Semin Cell Dev Biol       Date:  2009-08-05       Impact factor: 7.727

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  22 in total

1.  PSD-95 family MAGUKs are essential for anchoring AMPA and NMDA receptor complexes at the postsynaptic density.

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-24       Impact factor: 11.205

2.  Comparison of 3D cellular imaging techniques based on scanned electron probes: Serial block face SEM vs. Axial bright-field STEM tomography.

Authors:  E L McBride; A Rao; G Zhang; J D Hoyne; G N Calco; B C Kuo; Q He; A A Prince; I D Pokrovskaya; B Storrie; A A Sousa; M A Aronova; R D Leapman
Journal:  J Struct Biol       Date:  2018-02-01       Impact factor: 2.867

3.  Marker-free dual-axis tilt series alignment.

Authors:  Hanspeter Winkler; Kenneth A Taylor
Journal:  J Struct Biol       Date:  2013-02-19       Impact factor: 2.867

4.  Preparation and Observation of Thick Biological Samples by Scanning Transmission Electron Tomography.

Authors:  Sylvain Trépout; Philippe Bastin; Sergio Marco
Journal:  J Vis Exp       Date:  2017-03-12       Impact factor: 1.355

5.  Passive diffusion as a mechanism underlying ribbon synapse vesicle release and resupply.

Authors:  Cole W Graydon; Jun Zhang; Nicholas W Oesch; Alioscka A Sousa; Richard D Leapman; Jeffrey S Diamond
Journal:  J Neurosci       Date:  2014-07-02       Impact factor: 6.167

6.  Cryo-scanning transmission electron tomography of vitrified cells.

Authors:  Sharon Grayer Wolf; Lothar Houben; Michael Elbaum
Journal:  Nat Methods       Date:  2014-02-16       Impact factor: 28.547

7.  Photoreceptor disc membranes are formed through an Arp2/3-dependent lamellipodium-like mechanism.

Authors:  William J Spencer; Tylor R Lewis; Sebastien Phan; Martha A Cady; Ekaterina O Serebrovskaya; Nicholas F Schneider; Keun-Young Kim; Lisa A Cameron; Nikolai P Skiba; Mark H Ellisman; Vadim Y Arshavsky
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-16       Impact factor: 11.205

Review 8.  The cellular basis of platelet secretion: Emerging structure/function relationships.

Authors:  Shilpi Yadav; Brian Storrie
Journal:  Platelets       Date:  2016-12-23       Impact factor: 3.862

Review 9.  Development and application of STEM for the biological sciences.

Authors:  Alioscka A Sousa; Richard D Leapman
Journal:  Ultramicroscopy       Date:  2012-05-18       Impact factor: 2.689

Review 10.  The Atg17-Atg31-Atg29 Complex Coordinates with Atg11 to Recruit the Vam7 SNARE and Mediate Autophagosome-Vacuole Fusion.

Authors:  Xu Liu; Kai Mao; Angela Y H Yu; Amin Omairi-Nasser; Jotham Austin; Benjamin S Glick; Calvin K Yip; Daniel J Klionsky
Journal:  Curr Biol       Date:  2016-01-07       Impact factor: 10.834

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