Literature DB >> 23381660

The effect of protein composition on hydration dynamics.

O Rahaman1, S Melchionna, D Laage, F Sterpone.   

Abstract

Water dynamics at the surface of two homologous proteins with different thermal resistances is found to be unaffected by the different underlying amino-acid compositions, and when proteins are folded it responds similarly to temperature variations. Upon unfolding the water dynamics slowdown with respect to bulk decreases by a factor of two. Our findings are explained by the dominant topological perturbation induced by the protein on the water hydrogen bond dynamics.

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Year:  2013        PMID: 23381660      PMCID: PMC3827537          DOI: 10.1039/c3cp44582h

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  44 in total

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2.  Protein dynamics in a family of laboratory evolved thermophilic enzymes.

Authors:  Patrick L Wintrode; Deqiang Zhang; Nagarajan Vaidehi; Frances H Arnold; William A Goddard
Journal:  J Mol Biol       Date:  2003-03-28       Impact factor: 5.469

Review 3.  Protein hydration dynamics in solution: a critical survey.

Authors:  Bertil Halle
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

4.  Effects of high temperature on desolvation costs of salt bridges across protein binding interfaces: similarities and differences between implicit and explicit solvent models.

Authors:  Reza Salari; Lillian T Chong
Journal:  J Phys Chem B       Date:  2012-02-21       Impact factor: 2.991

5.  Hydration dynamics of a halophilic protein in folded and unfolded states.

Authors:  Johan Qvist; Gabriel Ortega; Xavier Tadeo; Oscar Millet; Bertil Halle
Journal:  J Phys Chem B       Date:  2012-03-02       Impact factor: 2.991

6.  Reorientation and allied dynamics in water and aqueous solutions.

Authors:  Damien Laage; Guillaume Stirnemann; Fabio Sterpone; Rossend Rey; James T Hynes
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

Review 7.  Protein engineering on enzymes of the peptide elongation cycle in Sulfolobus solfataricus.

Authors:  V Bocchini; B S Adinolfi; P Arcari; A Arcucci; A Dello Russo; E De Vendittis; G Ianniciello; M Masullo; G Raimo
Journal:  Biochimie       Date:  1998-11       Impact factor: 4.079

8.  Small structural changes account for the high thermostability of 1[4Fe-4S] ferredoxin from the hyperthermophilic bacterium Thermotoga maritima.

Authors:  S Macedo-Ribeiro; B Darimont; R Sterner; R Huber
Journal:  Structure       Date:  1996-11-15       Impact factor: 5.006

9.  Water hydrogen-bond dynamics around amino acids: the key role of hydrophilic hydrogen-bond acceptor groups.

Authors:  Fabio Sterpone; Guillaume Stirnemann; James T Hynes; Damien Laage
Journal:  J Phys Chem B       Date:  2010-02-11       Impact factor: 2.991

10.  Millisecond time scale conformational flexibility in a hyperthermophile protein at ambient temperature.

Authors:  G Hernandez; F E Jenney; M W Adams; D M LeMaster
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

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  11 in total

1.  Mesophilic Pyrophosphatase Function at High Temperature: A Molecular Dynamics Simulation Study.

Authors:  Rupesh Agarwal; Utsab R Shrestha; Xiang-Qiang Chu; Loukas Petridis; Jeremy C Smith
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2.  Hydration Dynamics of a Peripheral Membrane Protein.

Authors:  Olivier Fisette; Christopher Päslack; Ryan Barnes; J Mario Isas; Ralf Langen; Matthias Heyden; Songi Han; Lars V Schäfer
Journal:  J Am Chem Soc       Date:  2016-09-02       Impact factor: 15.419

Review 3.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

4.  Are coarse-grained models apt to detect protein thermal stability? The case of OPEP force field.

Authors:  Maria Kalimeri; Philippe Derreumaux; Fabio Sterpone
Journal:  J Non Cryst Solids       Date:  2014-07-22       Impact factor: 3.531

5.  Role of Internal Water on Protein Thermal Stability: The Case of Homologous G Domains.

Authors:  Obaidur Rahaman; Maria Kalimeri; Simone Melchionna; Jérôme Hénin; Fabio Sterpone
Journal:  J Phys Chem B       Date:  2014-10-15       Impact factor: 2.991

6.  Protein Simulations in Fluids: Coupling the OPEP Coarse-Grained Force Field with Hydrodynamics.

Authors:  Fabio Sterpone; Philippe Derreumaux; Simone Melchionna
Journal:  J Chem Theory Comput       Date:  2015-04-14       Impact factor: 6.006

7.  How conformational flexibility stabilizes the hyperthermophilic elongation factor G-domain.

Authors:  Maria Kalimeri; Obaidur Rahaman; Simone Melchionna; Fabio Sterpone
Journal:  J Phys Chem B       Date:  2013-10-24       Impact factor: 2.991

8.  Water dynamics in protein hydration shells: the molecular origins of the dynamical perturbation.

Authors:  Aoife C Fogarty; Damien Laage
Journal:  J Phys Chem B       Date:  2014-02-10       Impact factor: 2.991

9.  Heterogeneous preferential solvation of water and trifluoroethanol in homologous lysozymes.

Authors:  Evan J Arthur; John T King; Kevin J Kubarych; Charles L Brooks
Journal:  J Phys Chem B       Date:  2014-05-29       Impact factor: 2.991

10.  Stay Wet, Stay Stable? How Internal Water Helps the Stability of Thermophilic Proteins.

Authors:  Debashree Chakraborty; Antoine Taly; Fabio Sterpone
Journal:  J Phys Chem B       Date:  2015-09-23       Impact factor: 2.991

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