Literature DB >> 20085364

Water hydrogen-bond dynamics around amino acids: the key role of hydrophilic hydrogen-bond acceptor groups.

Fabio Sterpone1, Guillaume Stirnemann, James T Hynes, Damien Laage.   

Abstract

Water hydrogen-bond (HB) dynamics around amino acids in dilute aqueous solution is investigated through molecular dynamics simulations and analytic modeling. We especially highlight the critical role played by hydrophilic HB acceptors: the strength of the HB formed with water has a pronounced effect on the HB dynamics, in accord with several experimental observations. In contrast, we evidence that hydrophilic HB donors induce a moderate slowdown in the water HB exchange dynamics due to an excluded volume effect, similar to that of hydrophobic groups. We present an analytic model which rationalizes the effect of all examined amino acid sites on the HB dynamics and whose predictions are in excellent agreement with the numerical simulations. This model provides the acceleration or retardation in the HB exchange time with respect to the bulk through the combination of the solute excluded volume factor with the solute-water HB strength factor, both referring to the HB exchange transition state.

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Year:  2010        PMID: 20085364     DOI: 10.1021/jp9119793

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  17 in total

1.  Hydrogen Bond Network of Water around Protein Investigated with Terahertz and Infrared Spectroscopy.

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Journal:  Biophys J       Date:  2016-12-20       Impact factor: 4.033

2.  Real-space analysis of radiation-induced specific changes with independent component analysis.

Authors:  Dominika Borek; Raquel Bromberg; Johan Hattne; Zbyszek Otwinowski
Journal:  J Synchrotron Radiat       Date:  2018-02-22       Impact factor: 2.616

3.  Dynamic Water Hydrogen-Bond Networks at the Interface of a Lipid Membrane Containing Palmitoyl-Oleoyl Phosphatidylglycerol.

Authors:  Konstantina Karathanou; Ana-Nicoleta Bondar
Journal:  J Membr Biol       Date:  2018-03-09       Impact factor: 1.843

4.  Entropy connects water structure and dynamics in protein hydration layer.

Authors:  Jayangika N Dahanayake; Katie R Mitchell-Koch
Journal:  Phys Chem Chem Phys       Date:  2018-05-30       Impact factor: 3.676

5.  Superhydrophilic Modification of Polycarbonate Substrate Surface by Organic Plasma Polymerization Film.

Authors:  Kuan-Wei Lu; Yu-Tian Lin; Hung-Sen Wei; Chien-Cheng Kuo
Journal:  Materials (Basel)       Date:  2022-06-22       Impact factor: 3.748

Review 6.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

7.  Fast proton exchange in histidine: measurement of rate constants through indirect detection by NMR spectroscopy.

Authors:  Akansha Ashvani Sehgal; Luminita Duma; Geoffrey Bodenhausen; Philippe Pelupessy
Journal:  Chemistry       Date:  2014-04-09       Impact factor: 5.236

8.  Weighted protein residue networks based on joint recurrences between residues.

Authors:  Wael I Karain; Nael I Qaraeen
Journal:  BMC Bioinformatics       Date:  2015-05-26       Impact factor: 3.169

9.  The effect of protein composition on hydration dynamics.

Authors:  O Rahaman; S Melchionna; D Laage; F Sterpone
Journal:  Phys Chem Chem Phys       Date:  2013-02-04       Impact factor: 3.676

10.  New solvation free energy function comprising intermolecular solvation and intramolecular self-solvation terms.

Authors:  Hwanho Choi; Hongsuk Kang; Hwangseo Park
Journal:  J Cheminform       Date:  2013-02-04       Impact factor: 5.514

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