Literature DB >> 23304366

An evaluation of the NQF Quality Data Model for representing Electronic Health Record driven phenotyping algorithms.

William K Thompson1, Luke V Rasmussen, Jennifer A Pacheco, Peggy L Peissig, Joshua C Denny, Abel N Kho, Aaron Miller, Jyotishman Pathak.   

Abstract

The development of Electronic Health Record (EHR)-based phenotype selection algorithms is a non-trivial and highly iterative process involving domain experts and informaticians. To make it easier to port algorithms across institutions, it is desirable to represent them using an unambiguous formal specification language. For this purpose we evaluated the recently developed National Quality Forum (NQF) information model designed for EHR-based quality measures: the Quality Data Model (QDM). We selected 9 phenotyping algorithms that had been previously developed as part of the eMERGE consortium and translated them into QDM format. Our study concluded that the QDM contains several core elements that make it a promising format for EHR-driven phenotyping algorithms for clinical research. However, we also found areas in which the QDM could be usefully extended, such as representing information extracted from clinical text, and the ability to handle algorithms that do not consist of Boolean combinations of criteria.

Mesh:

Year:  2012        PMID: 23304366      PMCID: PMC3540514     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  23 in total

1.  The "meaningful use" regulation for electronic health records.

Authors:  David Blumenthal; Marilyn Tavenner
Journal:  N Engl J Med       Date:  2010-07-13       Impact factor: 91.245

2.  Health information technology: laying the infrastructure for national health reform.

Authors:  Melinda Beeuwkes Buntin; Sachin H Jain; David Blumenthal
Journal:  Health Aff (Millwood)       Date:  2010-06       Impact factor: 6.301

3.  Promoting use of health IT: why be a meaningful user?

Authors:  David Blumenthal
Journal:  Conn Med       Date:  2010-05

4.  Use of electronic health records in U.S. hospitals.

Authors:  Ashish K Jha; Catherine M DesRoches; Eric G Campbell; Karen Donelan; Sowmya R Rao; Timothy G Ferris; Alexandra Shields; Sara Rosenbaum; David Blumenthal
Journal:  N Engl J Med       Date:  2009-03-25       Impact factor: 91.245

Review 5.  Formal representation of eligibility criteria: a literature review.

Authors:  Chunhua Weng; Samson W Tu; Ida Sim; Rachel Richesson
Journal:  J Biomed Inform       Date:  2009-12-23       Impact factor: 6.317

6.  Electronic health records in ambulatory care--a national survey of physicians.

Authors:  Catherine M DesRoches; Eric G Campbell; Sowmya R Rao; Karen Donelan; Timothy G Ferris; Ashish Jha; Rainu Kaushal; Douglas E Levy; Sara Rosenbaum; Alexandra E Shields; David Blumenthal
Journal:  N Engl J Med       Date:  2008-06-18       Impact factor: 91.245

7.  Evaluation of a method to identify and categorize section headers in clinical documents.

Authors:  Joshua C Denny; Anderson Spickard; Kevin B Johnson; Neeraja B Peterson; Josh F Peterson; Randolph A Miller
Journal:  J Am Med Inform Assoc       Date:  2009-08-28       Impact factor: 4.497

8.  Electronic medical records for discovery research in rheumatoid arthritis.

Authors:  Katherine P Liao; Tianxi Cai; Vivian Gainer; Sergey Goryachev; Qing Zeng-treitler; Soumya Raychaudhuri; Peter Szolovits; Susanne Churchill; Shawn Murphy; Isaac Kohane; Elizabeth W Karlson; Robert M Plenge
Journal:  Arthritis Care Res (Hoboken)       Date:  2010-08       Impact factor: 4.794

9.  The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies.

Authors:  Catherine A McCarty; Rex L Chisholm; Christopher G Chute; Iftikhar J Kullo; Gail P Jarvik; Eric B Larson; Rongling Li; Daniel R Masys; Marylyn D Ritchie; Dan M Roden; Jeffery P Struewing; Wendy A Wolf
Journal:  BMC Med Genomics       Date:  2011-01-26       Impact factor: 3.063

10.  PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.

Authors:  Joshua C Denny; Marylyn D Ritchie; Melissa A Basford; Jill M Pulley; Lisa Bastarache; Kristin Brown-Gentry; Deede Wang; Dan R Masys; Dan M Roden; Dana C Crawford
Journal:  Bioinformatics       Date:  2010-03-24       Impact factor: 6.937

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  31 in total

1.  Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution.

Authors:  Guoqian Jiang; Richard C Kiefer; Luke V Rasmussen; Harold R Solbrig; Huan Mo; Jennifer A Pacheco; Jie Xu; Enid Montague; William K Thompson; Joshua C Denny; Christopher G Chute; Jyotishman Pathak
Journal:  J Biomed Inform       Date:  2016-07-05       Impact factor: 6.317

2.  A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury.

Authors:  Casey Lynnette Overby; Jyotishman Pathak; Omri Gottesman; Krystl Haerian; Adler Perotte; Sean Murphy; Kevin Bruce; Stephanie Johnson; Jayant Talwalkar; Yufeng Shen; Steve Ellis; Iftikhar Kullo; Christopher Chute; Carol Friedman; Erwin Bottinger; George Hripcsak; Chunhua Weng
Journal:  J Am Med Inform Assoc       Date:  2013-07-09       Impact factor: 4.497

3.  Defining a comprehensive verotype using electronic health records for personalized medicine.

Authors:  Mary Regina Boland; George Hripcsak; Yufeng Shen; Wendy K Chung; Chunhua Weng
Journal:  J Am Med Inform Assoc       Date:  2013-09-03       Impact factor: 4.497

4.  Formalization and computation of quality measures based on electronic medical records.

Authors:  Kathrin Dentler; Mattijs E Numans; Annette ten Teije; Ronald Cornet; Nicolette F de Keizer
Journal:  J Am Med Inform Assoc       Date:  2013-11-05       Impact factor: 4.497

5.  Integration of Clinical Decision Support and Electronic Clinical Quality Measurement: Domain Expert Insights and Implications for Future Direction.

Authors:  Polina Kukhareva; Charlene R Weir; Catherine Staes; Damian Borbolla; Stacey Slager; Kensaku Kawamoto
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

6.  Clinical research informatics and electronic health record data.

Authors:  R L Richesson; M M Horvath; S A Rusincovitch
Journal:  Yearb Med Inform       Date:  2014-08-15

Review 7.  Surveying Recent Themes in Translational Bioinformatics: Big Data in EHRs, Omics for Drugs, and Personal Genomics.

Authors:  J C Denny
Journal:  Yearb Med Inform       Date:  2014-08-15

8.  PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability.

Authors:  Jacqueline C Kirby; Peter Speltz; Luke V Rasmussen; Melissa Basford; Omri Gottesman; Peggy L Peissig; Jennifer A Pacheco; Gerard Tromp; Jyotishman Pathak; David S Carrell; Stephen B Ellis; Todd Lingren; Will K Thompson; Guergana Savova; Jonathan Haines; Dan M Roden; Paul A Harris; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2016-03-28       Impact factor: 4.497

9.  Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network.

Authors:  Ning Shang; Cong Liu; Luke V Rasmussen; Casey N Ta; Robert J Caroll; Barbara Benoit; Todd Lingren; Ozan Dikilitas; Frank D Mentch; David S Carrell; Wei-Qi Wei; Yuan Luo; Vivian S Gainer; Iftikhar J Kullo; Jennifer A Pacheco; Hakon Hakonarson; Theresa L Walunas; Joshua C Denny; Ken Wiley; Shawn N Murphy; George Hripcsak; Chunhua Weng
Journal:  J Biomed Inform       Date:  2019-09-19       Impact factor: 6.317

10.  Design patterns for the development of electronic health record-driven phenotype extraction algorithms.

Authors:  Luke V Rasmussen; Will K Thompson; Jennifer A Pacheco; Abel N Kho; David S Carrell; Jyotishman Pathak; Peggy L Peissig; Gerard Tromp; Joshua C Denny; Justin B Starren
Journal:  J Biomed Inform       Date:  2014-06-21       Impact factor: 6.317

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