Literature DB >> 23288464

Overview of DNA microarrays: types, applications, and their future.

Roger Bumgarner1.   

Abstract

This unit provides an overview of DNA microarrays. Microarrays are a technology in which thousands of nucleic acids are bound to a surface and are used to measure the relative concentration of nucleic acid sequences in a mixture via hybridization and subsequent detection of the hybridization events. This overview first discusses the history of microarrays and the antecedent technologies that led to their development. This is followed by discussion of the methods of manufacture of microarrays and the most common biological applications. The unit ends with a brief description of the limitations of microarrays and discusses how microarrays are being rapidly replaced by DNA sequencing technologies.
© 2013 by John Wiley & Sons, Inc.

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Year:  2013        PMID: 23288464      PMCID: PMC4011503          DOI: 10.1002/0471142727.mb2201s101

Source DB:  PubMed          Journal:  Curr Protoc Mol Biol        ISSN: 1934-3647


  64 in total

1.  ChIP-chip: a genomic approach for identifying transcription factor binding sites.

Authors:  Christine E Horak; Michael Snyder
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

Review 2.  Hybridization analyses of arrayed cDNA libraries.

Authors:  G G Lennon; H Lehrach
Journal:  Trends Genet       Date:  1991-10       Impact factor: 11.639

3.  Light-directed, spatially addressable parallel chemical synthesis.

Authors:  S P Fodor; J L Read; M C Pirrung; L Stryer; A T Lu; D Solas
Journal:  Science       Date:  1991-02-15       Impact factor: 47.728

4.  Light-generated oligonucleotide arrays for rapid DNA sequence analysis.

Authors:  A C Pease; D Solas; E J Sullivan; M T Cronin; C P Holmes; S P Fodor
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-24       Impact factor: 11.205

5.  The I.M.A.G.E. Consortium: an integrated molecular analysis of genomes and their expression.

Authors:  G Lennon; C Auffray; M Polymeropoulos; M B Soares
Journal:  Genomics       Date:  1996-04-01       Impact factor: 5.736

6.  Genome-wide expression profiling in Escherichia coli K-12.

Authors:  C S Richmond; J D Glasner; R Mau; H Jin; F R Blattner
Journal:  Nucleic Acids Res       Date:  1999-10-01       Impact factor: 16.971

7.  Quantitation of targets for PCR by use of limiting dilution.

Authors:  P J Sykes; S H Neoh; M J Brisco; E Hughes; J Condon; A A Morley
Journal:  Biotechniques       Date:  1992-09       Impact factor: 1.993

Review 8.  Using oligonucleotide probe arrays to access genetic diversity.

Authors:  R J Lipshutz; D Morris; M Chee; E Hubbell; M J Kozal; N Shah; N Shen; R Yang; S P Fodor
Journal:  Biotechniques       Date:  1995-09       Impact factor: 1.993

Review 9.  High density synthetic oligonucleotide arrays.

Authors:  R J Lipshutz; S P Fodor; T R Gingeras; D J Lockhart
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

10.  Design and implementation of microarray gene expression markup language (MAGE-ML).

Authors:  Paul T Spellman; Michael Miller; Jason Stewart; Charles Troup; Ugis Sarkans; Steve Chervitz; Derek Bernhart; Gavin Sherlock; Catherine Ball; Marc Lepage; Marcin Swiatek; W L Marks; Jason Goncalves; Scott Markel; Daniel Iordan; Mohammadreza Shojatalab; Angel Pizarro; Joe White; Robert Hubley; Eric Deutsch; Martin Senger; Bruce J Aronow; Alan Robinson; Doug Bassett; Christian J Stoeckert; Alvis Brazma
Journal:  Genome Biol       Date:  2002-08-23       Impact factor: 13.583

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  69 in total

1.  Sequence-specific sepsis-related DNA capture and fluorescent labeling in monoliths prepared by single-step photopolymerization in microfluidic devices.

Authors:  Radim Knob; Robert L Hanson; Olivia B Tateoka; Ryan L Wood; Israel Guerrero-Arguero; Richard A Robison; William G Pitt; Adam T Woolley
Journal:  J Chromatogr A       Date:  2018-05-21       Impact factor: 4.759

Review 2.  Not Only Mutations Matter: Molecular Picture of Acute Myeloid Leukemia Emerging from Transcriptome Studies.

Authors:  Luiza Handschuh
Journal:  J Oncol       Date:  2019-07-30       Impact factor: 4.375

Review 3.  Diagnostic molecular techniques in haematology: recent advances.

Authors:  Aikaterini Koutsi; Elisavet-Christina Vervesou
Journal:  Ann Transl Med       Date:  2018-06

4.  Non-Langmuir Kinetics of DNA Surface Hybridization.

Authors:  Luka Vanjur; Thomas Carzaniga; Luca Casiraghi; Marcella Chiari; Giuliano Zanchetta; Marco Buscaglia
Journal:  Biophys J       Date:  2020-07-29       Impact factor: 4.033

5.  Microarray analyzer based on wide field fluorescent microscopy with laser illumination and a device for speckle suppression.

Authors:  Yuri Lysov; Victor Barsky; Dmitriy Urasov; Roman Urasov; Alecksey Cherepanov; Dmitryi Mamaev; Yegor Yegorov; Alexander Chudinov; Sergey Surzhikov; Alla Rubina; Olga Smoldovskaya; Alexander Zasedatelev
Journal:  Biomed Opt Express       Date:  2017-10-03       Impact factor: 3.732

Review 6.  Methods for the analysis of transcriptome dynamics.

Authors:  Daniela F Rodrigues; Vera M Costa; Ricardo Silvestre; Maria L Bastos; Félix Carvalho
Journal:  Toxicol Res (Camb)       Date:  2019-07-26       Impact factor: 3.524

Review 7.  Microfluidic methods for aptamer selection and characterization.

Authors:  Sean K Dembowski; Michael T Bowser
Journal:  Analyst       Date:  2017-12-18       Impact factor: 4.616

Review 8.  The role of systems biology approaches in determining molecular signatures for the development of more effective vaccines.

Authors:  Abdulmohammad Pezeshki; Inna G Ovsyannikova; Brett A McKinney; Gregory A Poland; Richard B Kennedy
Journal:  Expert Rev Vaccines       Date:  2019-02-11       Impact factor: 5.217

Review 9.  Stems cells, big data and compendium-based analyses for identifying cell types, signalling pathways and gene regulatory networks.

Authors:  Md Humayun Kabir; Michael D O'Connor
Journal:  Biophys Rev       Date:  2019-01-25

10.  Pathogen-specific DNA sensing with engineered zinc finger proteins immobilized on a polymer chip.

Authors:  Dat Thinh Ha; Sthitodhi Ghosh; Chong H Ahn; David J Segal; Moon-Soo Kim
Journal:  Analyst       Date:  2018-08-20       Impact factor: 4.616

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