Literature DB >> 12073330

ChIP-chip: a genomic approach for identifying transcription factor binding sites.

Christine E Horak1, Michael Snyder.   

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Year:  2002        PMID： 12073330     DOI： 10.1016/s0076-6879(02)50979-4

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


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  62 in total

1.  Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae.

Authors:  Christine E Horak; Nicholas M Luscombe; Jiang Qian; Paul Bertone; Stacy Piccirrillo; Mark Gerstein; Michael Snyder
Journal:  Genes Dev       Date:  2002-12-01       Impact factor: 11.361

2.  CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.

Authors:  Eugene Berezikov; Victor Guryev; Ronald H A Plasterk; Edwin Cuppen
Journal:  Genome Res       Date:  2003-12-12       Impact factor: 9.043

3.  ExpressYourself: A modular platform for processing and visualizing microarray data.

Authors:  Nicholas M Luscombe; Thomas E Royce; Paul Bertone; Nathaniel Echols; Christine E Horak; Joseph T Chang; Michael Snyder; Mark Gerstein
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

Review 4.  Experimental strategies for studying transcription factor-DNA binding specificities.

Authors:  Marcel Geertz; Sebastian J Maerkl
Journal:  Brief Funct Genomics       Date:  2010-09-23       Impact factor: 4.241

5.  Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping.

Authors:  Tae-Young Roh; Suresh Cuddapah; Keji Zhao
Journal:  Genes Dev       Date:  2005-02-10       Impact factor: 11.361

6.  Design optimization methods for genomic DNA tiling arrays.

Authors:  Paul Bertone; Valery Trifonov; Joel S Rozowsky; Falk Schubert; Olof Emanuelsson; John Karro; Ming-Yang Kao; Michael Snyder; Mark Gerstein
Journal:  Genome Res       Date:  2005-12-19       Impact factor: 9.043

7.  Assessing the limits of genomic data integration for predicting protein networks.

Authors:  Long J Lu; Yu Xia; Alberto Paccanaro; Haiyuan Yu; Mark Gerstein
Journal:  Genome Res       Date:  2005-07       Impact factor: 9.043

Review 8.  Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Authors:  Thomas E Royce; Joel S Rozowsky; Paul Bertone; Manoj Samanta; Viktor Stolc; Sherman Weissman; Michael Snyder; Mark Gerstein
Journal:  Trends Genet       Date:  2005-08       Impact factor: 11.639

9.  Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.

Authors:  Olof Emanuelsson; Ugrappa Nagalakshmi; Deyou Zheng; Joel S Rozowsky; Alexander E Urban; Jiang Du; Zheng Lian; Viktor Stolc; Sherman Weissman; Michael Snyder; Mark B Gerstein
Journal:  Genome Res       Date:  2006-11-21       Impact factor: 9.043

10.  Bayesian error analysis model for reconstructing transcriptional regulatory networks.

Authors:  Ning Sun; Raymond J Carroll; Hongyu Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-15       Impact factor: 11.205
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