Literature DB >> 23286465

Revealing nature's synthetic potential through the study of ribosomal natural product biosynthesis.

Kyle L Dunbar1, Douglas A Mitchell.   

Abstract

Ribosomally synthesized posttranslationally modified <n class="Chemical">spaclass="Chemical">n class="Chemical">peptideclass="Chemical">n>s (RiPPs) are a rapidly growing class of natural products with diverse structures and activities. In recent years, a great deal of progress has been made in elucidating the biosynthesis of various RiPP family members. As with the study of nonribosomal <class="Chemical">spn>an class="Chemical">peptide and <class="Chemical">span class="Chemical">polyketide biosynthetic enzymes, these investigations have led to the discovery of entirely new biological chemistry. With each unique enzyme investigated, a more complex picture of Nature's synthetic potential is revealed. This Review focuses on recent reports (since 2008) that have changed the way that we think about ribosomal natural product biosynthesis and the enzymology of complex bond-forming reactions.

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Year:  2013        PMID: 23286465      PMCID: PMC3600061          DOI: 10.1021/cb3005325

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  106 in total

1.  A major portion of DNA gyrase inhibitor microcin B17 undergoes an N,O-peptidyl shift during synthesis.

Authors:  Dmitry Ghilarov; Marina Serebryakova; Irina Shkundina; Konstantin Severinov
Journal:  J Biol Chem       Date:  2011-05-31       Impact factor: 5.157

Review 2.  Antibiotics as probes of biological complexity.

Authors:  Shannon B Falconer; Tomasz L Czarny; Eric D Brown
Journal:  Nat Chem Biol       Date:  2011-07       Impact factor: 15.040

3.  Enzymatic basis of ribosomal peptide prenylation in cyanobacteria.

Authors:  John A McIntosh; Mohamed S Donia; Satish K Nair; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2011-08-04       Impact factor: 15.419

4.  Characterization of NocL involved in thiopeptide nocathiacin I biosynthesis: a [4Fe-4S] cluster and the catalysis of a radical S-adenosylmethionine enzyme.

Authors:  Qi Zhang; Dandan Chen; Jun Lin; Rijing Liao; Wei Tong; Zhinan Xu; Wen Liu
Journal:  J Biol Chem       Date:  2011-03-29       Impact factor: 5.157

Review 5.  Anaerobic functionalization of unactivated C-H bonds.

Authors:  Squire J Booker
Journal:  Curr Opin Chem Biol       Date:  2009-03-16       Impact factor: 8.822

Review 6.  Ribosomal peptide natural products: bridging the ribosomal and nonribosomal worlds.

Authors:  John A McIntosh; Mohamed S Donia; Eric W Schmidt
Journal:  Nat Prod Rep       Date:  2009-04       Impact factor: 13.423

7.  Nosiheptide biosynthesis featuring a unique indole side ring formation on the characteristic thiopeptide framework.

Authors:  Yi Yu; Lian Duan; Qi Zhang; Rijing Liao; Ying Ding; Haixue Pan; Evelyn Wendt-Pienkowski; Gongli Tang; Ben Shen; Wen Liu
Journal:  ACS Chem Biol       Date:  2009-10-16       Impact factor: 5.100

Review 8.  Prenyl transfer to aromatic substrates in the biosynthesis of aminocoumarins, meroterpenoids and phenazines: the ABBA prenyltransferase family.

Authors:  Orwah Saleh; Yvonne Haagen; Kerstin Seeger; Lutz Heide
Journal:  Phytochemistry       Date:  2009-06-24       Impact factor: 4.072

9.  How the MccB bacterial ancestor of ubiquitin E1 initiates biosynthesis of the microcin C7 antibiotic.

Authors:  Catherine A Regni; Rebecca F Roush; Darcie J Miller; Amanda Nourse; Christopher T Walsh; Brenda A Schulman
Journal:  EMBO J       Date:  2009-06-04       Impact factor: 11.598

10.  Genome mining for radical SAM protein determinants reveals multiple sactibiotic-like gene clusters.

Authors:  Kiera Murphy; Orla O'Sullivan; Mary C Rea; Paul D Cotter; R Paul Ross; Colin Hill
Journal:  PLoS One       Date:  2011-07-08       Impact factor: 3.240

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  19 in total

Review 1.  Prospecting genomes for lasso peptides.

Authors:  Mikhail O Maksimov; A James Link
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-19       Impact factor: 3.346

2.  The posttranslational modification cascade to the thiopeptide berninamycin generates linear forms and altered macrocyclic scaffolds.

Authors:  Steven J Malcolmson; Travis S Young; J Graham Ruby; Peter Skewes-Cox; Christopher T Walsh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-06       Impact factor: 11.205

3.  Identification of an Auxiliary Leader Peptide-Binding Protein Required for Azoline Formation in Ribosomal Natural Products.

Authors:  Kyle L Dunbar; Jonathan I Tietz; Courtney L Cox; Brandon J Burkhart; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2015-06-12       Impact factor: 15.419

4.  The structure of CgnJ, a domain of unknown function protein from the crocagin gene cluster.

Authors:  Sebastian Adam; Andreas Klein; Frank Surup; Jesko Koehnke
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-02-21       Impact factor: 1.056

Review 5.  Oxidative Cyclization in Natural Product Biosynthesis.

Authors:  Man-Cheng Tang; Yi Zou; Kenji Watanabe; Christopher T Walsh; Yi Tang
Journal:  Chem Rev       Date:  2016-12-12       Impact factor: 60.622

Review 6.  Mechanistic Understanding of Lanthipeptide Biosynthetic Enzymes.

Authors:  Lindsay M Repka; Jonathan R Chekan; Satish K Nair; Wilfred A van der Donk
Journal:  Chem Rev       Date:  2017-01-30       Impact factor: 60.622

7.  Expanding the chemical diversity of lasso peptide MccJ25 with genetically encoded noncanonical amino acids.

Authors:  Frank J Piscotta; Jeffery M Tharp; Wenshe R Liu; A James Link
Journal:  Chem Commun (Camb)       Date:  2014-11-18       Impact factor: 6.222

8.  Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides.

Authors:  Tyler L Grove; Paul M Himes; Sungwon Hwang; Hayretin Yumerefendi; Jeffrey B Bonanno; Brian Kuhlman; Steven C Almo; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2017-08-21       Impact factor: 15.419

9.  Enzymatic C-H Oxidation-Amidation Cascade in the Production of Natural and Unnatural Thiotetronate Antibiotics with Potentiated Bioactivity.

Authors:  Jie Li; Xiaoyu Tang; Takayoshi Awakawa; Bradley S Moore
Journal:  Angew Chem Int Ed Engl       Date:  2017-09-01       Impact factor: 15.336

10.  Insights into the mechanism of peptide cyclodehydrations achieved through the chemoenzymatic generation of amide derivatives.

Authors:  Kyle L Dunbar; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2013-05-30       Impact factor: 15.419

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