Literature DB >> 19642421

Ribosomal peptide natural products: bridging the ribosomal and nonribosomal worlds.

John A McIntosh1, Mohamed S Donia, Eric W Schmidt.   

Abstract

Ribosomally synthesized bacterial natural products rival the nonribosomal peptides in their structural and functional diversity. The last decade has seen substantial progress in the identification and characterization of biosynthetic pathways leading to ribosomal peptide natural products with new and unusual structural motifs. In some of these cases, the motifs are similar to those found in nonribosomal peptides, and many are constructed by convergent or even paralogous enzymes. Here, we summarize the major structural and biosynthetic categories of ribosomally synthesized bacterial natural products and, where applicable, compare them to their homologs from nonribosomal biosynthesis.

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Year:  2009        PMID: 19642421      PMCID: PMC2975598          DOI: 10.1039/b714132g

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  353 in total

1.  Formylation domain: an essential modifying enzyme for the nonribosomal biosynthesis of linear gramicidin.

Authors:  Georg Schoenafinger; Nadine Schracke; Uwe Linne; Mohamed A Marahiel
Journal:  J Am Chem Soc       Date:  2006-06-14       Impact factor: 15.419

2.  Excision of the epothilone synthetase B cyclization domain and demonstration of in trans condensation/cyclodehydration activity.

Authors:  Wendy L Kelly; Nathan J Hillson; Christopher T Walsh
Journal:  Biochemistry       Date:  2005-10-11       Impact factor: 3.162

3.  Molecular characterization of the enniatin synthetase gene encoding a multifunctional enzyme catalysing N-methyldepsipeptide formation in Fusarium scirpi.

Authors:  A Haese; M Schubert; M Herrmann; R Zocher
Journal:  Mol Microbiol       Date:  1993-03       Impact factor: 3.501

4.  Processing of the initiation methionine from proteins: properties of the Escherichia coli methionine aminopeptidase and its gene structure.

Authors:  A Ben-Bassat; K Bauer; S Y Chang; K Myambo; A Boosman; S Chang
Journal:  J Bacteriol       Date:  1987-02       Impact factor: 3.490

5.  Mechanistic investigations of the dehydration reaction of lacticin 481 synthetase using site-directed mutagenesis.

Authors:  Young Ok You; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2007-04-25       Impact factor: 3.162

Review 6.  Genetic features of circular bacteriocins produced by Gram-positive bacteria.

Authors:  Mercedes Maqueda; Marina Sánchez-Hidalgo; Matilde Fernández; Manuel Montalbán-López; Eva Valdivia; Manuel Martínez-Bueno
Journal:  FEMS Microbiol Rev       Date:  2007-11-20       Impact factor: 16.408

7.  Anantin--a peptide antagonist of the atrial natriuretic factor (ANF). II. Determination of the primary sequence by NMR on the basis of proton assignments.

Authors:  D F Wyss; H W Lahm; M Manneberg; A M Labhardt
Journal:  J Antibiot (Tokyo)       Date:  1991-02       Impact factor: 2.649

8.  Aerucyclamides A and B: isolation and synthesis of toxic ribosomal heterocyclic peptides from the cyanobacterium Microcystis aeruginosa PCC 7806.

Authors:  Cyril Portmann; Judith F Blom; Karl Gademann; Friedrich Jüttner
Journal:  J Nat Prod       Date:  2008-06-18       Impact factor: 4.050

9.  Subtilosin A, a new antibiotic peptide produced by Bacillus subtilis 168: isolation, structural analysis, and biogenesis.

Authors:  K Babasaki; T Takao; Y Shimonishi; K Kurahashi
Journal:  J Biochem       Date:  1985-09       Impact factor: 3.387

10.  Structure of subtilosin A, a cyclic antimicrobial peptide from Bacillus subtilis with unusual sulfur to alpha-carbon cross-links: formation and reduction of alpha-thio-alpha-amino acid derivatives.

Authors:  Karen E Kawulka; Tara Sprules; Christopher M Diaper; Randy M Whittal; Ryan T McKay; Pascal Mercier; Peter Zuber; John C Vederas
Journal:  Biochemistry       Date:  2004-03-30       Impact factor: 3.162

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  93 in total

1.  Manipulation of thiocillin variants by prepeptide gene replacement: structure, conformation, and activity of heterocycle substitution mutants.

Authors:  Albert A Bowers; Michael G Acker; Alexander Koglin; Christopher T Walsh
Journal:  J Am Chem Soc       Date:  2010-06-02       Impact factor: 15.419

2.  Linking chemistry and genetics in the growing cyanobactin natural products family.

Authors:  Mohamed S Donia; Eric W Schmidt
Journal:  Chem Biol       Date:  2011-04-22

3.  Cloning and heterologous expression of the thioviridamide biosynthesis gene cluster from Streptomyces olivoviridis.

Authors:  Masumi Izawa; Takashi Kawasaki; Yoichi Hayakawa
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

Review 4.  Genome mining for ribosomally synthesized natural products.

Authors:  Juan E Velásquez; Wilfred A van der Donk
Journal:  Curr Opin Chem Biol       Date:  2010-11-20       Impact factor: 8.822

Review 5.  Prospecting genomes for lasso peptides.

Authors:  Mikhail O Maksimov; A James Link
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-19       Impact factor: 3.346

6.  Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.

Authors:  Bo Li; Daniel Sher; Libusha Kelly; Yanxiang Shi; Katherine Huang; Patrick J Knerr; Ike Joewono; Doug Rusch; Sallie W Chisholm; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

7.  Post-Translational Tyrosine Geranylation in Cyanobactin Biosynthesis.

Authors:  Maho Morita; Yue Hao; Jouni K Jokela; Debosmita Sardar; Zhenjian Lin; Kaarina Sivonen; Satish K Nair; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2018-05-01       Impact factor: 15.419

Review 8.  Various mechanisms in cyclopeptide production from precursors synthesized independently of non-ribosomal peptide synthetases.

Authors:  Wenyan Xu; Liling Li; Liangcheng Du; Ninghua Tan
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2011-07-14       Impact factor: 3.848

Review 9.  Biosynthetic Proteases That Catalyze the Macrocyclization of Ribosomally Synthesized Linear Peptides.

Authors:  Chayanid Ongpipattanakul; Satish K Nair
Journal:  Biochemistry       Date:  2018-03-27       Impact factor: 3.162

10.  Expansion of ribosomally produced natural products: a nitrile hydratase- and Nif11-related precursor family.

Authors:  Daniel H Haft; Malay Kumar Basu; Douglas A Mitchell
Journal:  BMC Biol       Date:  2010-05-25       Impact factor: 7.431

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