Literature DB >> 23650400

The posttranslational modification cascade to the thiopeptide berninamycin generates linear forms and altered macrocyclic scaffolds.

Steven J Malcolmson1, Travis S Young, J Graham Ruby, Peter Skewes-Cox, Christopher T Walsh.   

Abstract

Berninamycin is a member of the pyridine-containing thiopeptide class of antibiotics that undergoes massive posttranslational modifications from ribosomally generated preproteins. Berninamycin has a 2-oxazolyl-3-thiazolyl-pyridine core embedded in a 35-atom macrocycle rather than typical trithiazolylpyridine cores embedded in 26-atom and 29-atom peptide macrocycles. We describe the cloning of an 11-gene berninamycin cluster from Streptomyces bernensis UC 5144, its heterologous expression in Streptomyces lividans TK24 and Streptomyces venezuelae ATCC 10712, and detection of variant and incompletely processed scaffolds. Posttranslational maturation in S. lividans of both the wild-type berninamycin prepeptide (BerA) and also a T3A mutant generates macrocyclic compounds as well as linear variants, which have failed to form the pyridine and the macrocycle. Expression of the gene cluster in S. venezuelae generates a variant of the 35-atom skeleton of berninamycin, containing a methyloxazoline in the place of a methyloxazole within the macrocyclic framework.

Entities:  

Keywords:  heterologous expression; linear precursors; prepeptide gene replacement

Mesh:

Substances:

Year:  2013        PMID: 23650400      PMCID: PMC3666682          DOI: 10.1073/pnas.1307111110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Thirteen posttranslational modifications convert a 14-residue peptide into the antibiotic thiocillin.

Authors:  Laura C Wieland Brown; Michael G Acker; Jon Clardy; Christopher T Walsh; Michael A Fischbach
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-05       Impact factor: 11.205

2.  Thiopeptide antibiotic biosynthesis.

Authors:  Hans-Dieter Arndt; Sebastian Schoof; Jin-Yong Lu
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

Review 3.  Biosynthesis of thiopeptide antibiotics and their pathway engineering.

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Journal:  Nat Prod Rep       Date:  2013-02       Impact factor: 13.423

Review 4.  Revealing nature's synthetic potential through the study of ribosomal natural product biosynthesis.

Authors:  Kyle L Dunbar; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2013-01-08       Impact factor: 5.100

5.  Thiostrepton biosynthesis: prototype for a new family of bacteriocins.

Authors:  Wendy L Kelly; Lisa Pan; Chaoxuan Li
Journal:  J Am Chem Soc       Date:  2009-04-01       Impact factor: 15.419

6.  Codon randomization for rapid exploration of chemical space in thiopeptide antibiotic variants.

Authors:  Travis S Young; Pieter C Dorrestein; Christopher T Walsh
Journal:  Chem Biol       Date:  2012-12-21

7.  Generation of thiocillin variants by prepeptide gene replacement and in vivo processing by Bacillus cereus.

Authors:  Michael G Acker; Albert A Bowers; Christopher T Walsh
Journal:  J Am Chem Soc       Date:  2009-12-09       Impact factor: 15.419

8.  Ribosomally synthesized thiopeptide antibiotics targeting elongation factor Tu.

Authors:  Rowan P Morris; Jennifer A Leeds; Hans Ulrich Naegeli; Lukas Oberer; Klaus Memmert; Eric Weber; Matthew J LaMarche; Christian N Parker; Nathalie Burrer; Stacey Esterow; Andreas E Hein; Esther K Schmitt; Philipp Krastel
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

Review 9.  Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature.

Authors:  Paul G Arnison; Mervyn J Bibb; Gabriele Bierbaum; Albert A Bowers; Tim S Bugni; Grzegorz Bulaj; Julio A Camarero; Dominic J Campopiano; Gregory L Challis; Jon Clardy; Paul D Cotter; David J Craik; Michael Dawson; Elke Dittmann; Stefano Donadio; Pieter C Dorrestein; Karl-Dieter Entian; Michael A Fischbach; John S Garavelli; Ulf Göransson; Christian W Gruber; Daniel H Haft; Thomas K Hemscheidt; Christian Hertweck; Colin Hill; Alexander R Horswill; Marcel Jaspars; Wendy L Kelly; Judith P Klinman; Oscar P Kuipers; A James Link; Wen Liu; Mohamed A Marahiel; Douglas A Mitchell; Gert N Moll; Bradley S Moore; Rolf Müller; Satish K Nair; Ingolf F Nes; Gillian E Norris; Baldomero M Olivera; Hiroyasu Onaka; Mark L Patchett; Joern Piel; Martin J T Reaney; Sylvie Rebuffat; R Paul Ross; Hans-Georg Sahl; Eric W Schmidt; Michael E Selsted; Konstantin Severinov; Ben Shen; Kaarina Sivonen; Leif Smith; Torsten Stein; Roderich D Süssmuth; John R Tagg; Gong-Li Tang; Andrew W Truman; John C Vederas; Christopher T Walsh; Jonathan D Walton; Silke C Wenzel; Joanne M Willey; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2013-01       Impact factor: 13.423

Review 10.  Follow the leader: the use of leader peptides to guide natural product biosynthesis.

Authors:  Trent J Oman; Wilfred A van der Donk
Journal:  Nat Chem Biol       Date:  2010-01       Impact factor: 15.040

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  25 in total

Review 1.  Elucidating and engineering thiopeptide biosynthesis.

Authors:  Philip R Bennallack; Joel S Griffitts
Journal:  World J Microbiol Biotechnol       Date:  2017-05-11       Impact factor: 3.312

Review 2.  Streptomycetes: Surrogate hosts for the genetic manipulation of biosynthetic gene clusters and production of natural products.

Authors:  Keshav K Nepal; Guojun Wang
Journal:  Biotechnol Adv       Date:  2018-10-09       Impact factor: 14.227

3.  An α/β-hydrolase fold protein in the biosynthesis of thiostrepton exhibits a dual activity for endopeptidyl hydrolysis and epoxide ring opening/macrocyclization.

Authors:  Qingfei Zheng; Shoufeng Wang; Panpan Duan; Rijing Liao; Dandan Chen; Wen Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-23       Impact factor: 11.205

4.  Mutagenesis of NosM Leader Peptide Reveals Important Elements in Nosiheptide Biosynthesis.

Authors:  Liang Jin; Xuri Wu; Yanjiu Xue; Yue Jin; Shuzhen Wang; Yijun Chen
Journal:  Appl Environ Microbiol       Date:  2017-02-01       Impact factor: 4.792

5.  Saturation mutagenesis of TsrA Ala4 unveils a highly mutable residue of thiostrepton A.

Authors:  Feifei Zhang; Wendy L Kelly
Journal:  ACS Chem Biol       Date:  2015-01-20       Impact factor: 5.100

6.  A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics.

Authors:  Mohamed S Donia; Peter Cimermancic; Christopher J Schulze; Laura C Wieland Brown; John Martin; Makedonka Mitreva; Jon Clardy; Roger G Linington; Michael A Fischbach
Journal:  Cell       Date:  2014-09-11       Impact factor: 41.582

Review 7.  New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products.

Authors:  Manuel A Ortega; Wilfred A van der Donk
Journal:  Cell Chem Biol       Date:  2016-01-21       Impact factor: 8.116

8.  Functional roles in S-adenosyl-L-methionine binding and catalysis for active site residues of the thiostrepton resistance methyltransferase.

Authors:  Cullen L Myers; Emily G Kuiper; Pei C Grant; Jennifer Hernandez; Graeme L Conn; John F Honek
Journal:  FEBS Lett       Date:  2015-10-09       Impact factor: 4.124

9.  Reconstitution and Minimization of a Micrococcin Biosynthetic Pathway in Bacillus subtilis.

Authors:  Philip R Bennallack; Kathryn D Bewley; Mark A Burlingame; Richard A Robison; Susan M Miller; Joel S Griffitts
Journal:  J Bacteriol       Date:  2016-08-25       Impact factor: 3.490

Review 10.  YcaO-Dependent Posttranslational Amide Activation: Biosynthesis, Structure, and Function.

Authors:  Brandon J Burkhart; Christopher J Schwalen; Greg Mann; James H Naismith; Douglas A Mitchell
Journal:  Chem Rev       Date:  2017-03-03       Impact factor: 60.622

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