Literature DB >> 19297239

Anaerobic functionalization of unactivated C-H bonds.

Squire J Booker1.   

Abstract

The functionalization of alkanes was once thought to lie strictly within the domain of enzymes that activate n class="Chemical">dioxygen in order to generate an oxidant with suitable potency to cleave inert C-H bonds. The emergence of the radical SAM superfamily of enzymes-those which use S-adenosyl-l-methionine as a precursor to a 5'-deoxyadenosyl 5'-radical-has kindled a renaissance in the study of radical-dependent enzymatic reactions, and is ushering in a wealth of new and intriguing chemistry that remains to be elucidated. This review will focus on a special subclass of radical SAM enzymes that functionalize inert C-H bonds, highlighting the functional groups and the chemistry that leads to their insertion. Within this class are first, enzymes that catalyze sulfur insertion, the prototype of which is biotin synthase; second, enzymes that catalyze P-methylation or C-methylation, such as P-methylase or Fom3; third, enzymes that catalyze oxygen insertion, such as the anaerobic magnesium protoporphyrin-IX oxidative cyclase (BchE); and fourth, enzymes that functionalize n-hexane or other alkanes as the first step in the metabolism of these inert compounds by certain bacteria. In addition to surveying reactions that have been studied at various levels of detail, this review will speculate on the mechanisms of other types of reactions that this chemistry lends itself to.

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Year:  2009        PMID: 19297239      PMCID: PMC2762545          DOI: 10.1016/j.cbpa.2009.02.036

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  66 in total

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Review 2.  Rings, radicals, and regeneration: the early years of a bioorganic laboratory.

Authors:  Wilfred A van der Donk
Journal:  J Org Chem       Date:  2006-12-22       Impact factor: 4.354

Review 3.  Anaerobic oxidation of methane: mechanisms, bioenergetics, and the ecology of associated microorganisms.

Authors:  Sara L Caldwell; James R Laidler; Elizabeth A Brewer; Jed O Eberly; Sean C Sandborgh; Frederick S Colwell
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4.  Identification and analysis of genes involved in anaerobic toluene metabolism by strain T1: putative role of a glycine free radical.

Authors:  P W Coschigano; T S Wehrman; L Y Young
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5.  Anaerobic oxidation of alkanes by newly isolated denitrifying bacteria.

Authors:  P Ehrenreich; A Behrends; J Harder; F Widdel
Journal:  Arch Microbiol       Date:  2000-01       Impact factor: 2.552

6.  Anaerobic chlorophyll isocyclic ring formation in Rhodobacter capsulatus requires a cobalamin cofactor.

Authors:  S P Gough; B O Petersen; J O Duus
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

Review 7.  S-adenosylmethionine as an oxidant: the radical SAM superfamily.

Authors:  Susan C Wang; Perry A Frey
Journal:  Trends Biochem Sci       Date:  2007-02-08       Impact factor: 13.807

8.  Genes encoding the candidate enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1.

Authors:  Olav Grundmann; Astrid Behrends; Ralf Rabus; Judith Amann; Thomas Halder; Johann Heider; Friedrich Widdel
Journal:  Environ Microbiol       Date:  2007-10-24       Impact factor: 5.491

9.  Characterization of the cofactor composition of Escherichia coli biotin synthase.

Authors:  Michele Mader Cosper; Guy N L Jameson; Heather L Hernández; Carsten Krebs; Boi Hanh Huynh; Michael K Johnson
Journal:  Biochemistry       Date:  2004-02-24       Impact factor: 3.162

10.  RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli.

Authors:  Brian P Anton; Lana Saleh; Jack S Benner; Elisabeth A Raleigh; Simon Kasif; Richard J Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-05       Impact factor: 11.205

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  52 in total

1.  A consensus mechanism for Radical SAM-dependent dehydrogenation? BtrN contains two [4Fe-4S] clusters.

Authors:  Tyler L Grove; Jessica H Ahlum; Priya Sharma; Carsten Krebs; Squire J Booker
Journal:  Biochemistry       Date:  2010-05-11       Impact factor: 3.162

2.  Bioinformatic Identification of Novel Methyltransferases.

Authors:  Tanya Petrossian; Steven Clarke
Journal:  Epigenomics       Date:  2009-10-01       Impact factor: 4.778

3.  Spectroscopic studies on the [4Fe-4S] cluster in adenosine 5'-phosphosulfate reductase from Mycobacterium tuberculosis.

Authors:  Devayani P Bhave; Jiyoung A Hong; Michael Lee; Wei Jiang; Carsten Krebs; Kate S Carroll
Journal:  J Biol Chem       Date:  2010-11-12       Impact factor: 5.157

Review 4.  Thermochemistry of proton-coupled electron transfer reagents and its implications.

Authors:  Jeffrey J Warren; Tristan A Tronic; James M Mayer
Journal:  Chem Rev       Date:  2010-10-06       Impact factor: 60.622

5.  In vitro phosphinate methylation by PhpK from Kitasatospora phosalacinea.

Authors:  Williard J Werner; Kylie D Allen; Kaifeng Hu; Gregory L Helms; Brian S Chen; Susan C Wang
Journal:  Biochemistry       Date:  2011-09-28       Impact factor: 3.162

Review 6.  Enzymatic functionalization of carbon-hydrogen bonds.

Authors:  Jared C Lewis; Pedro S Coelho; Frances H Arnold
Journal:  Chem Soc Rev       Date:  2010-11-15       Impact factor: 54.564

7.  The antiviral protein viperin is a radical SAM enzyme.

Authors:  Kaitlin S Duschene; Joan B Broderick
Journal:  FEBS Lett       Date:  2010-02-20       Impact factor: 4.124

8.  The thiamine biosynthetic enzyme ThiC catalyzes multiple turnovers and is inhibited by S-adenosylmethionine (AdoMet) metabolites.

Authors:  Lauren D Palmer; Diana M Downs
Journal:  J Biol Chem       Date:  2013-09-06       Impact factor: 5.157

9.  Chemical and Biological Reduction of the Radical SAM Enzyme 7-Carboxy-7-deazaguanine [corrected] Synthase.

Authors:  Nathan A Bruender; Anthony P Young; Vahe Bandarian
Journal:  Biochemistry       Date:  2015-05-01       Impact factor: 3.162

10.  RlmN and Cfr are radical SAM enzymes involved in methylation of ribosomal RNA.

Authors:  Feng Yan; Jacqueline M LaMarre; Rene Röhrich; Jochen Wiesner; Hassan Jomaa; Alexander S Mankin; Danica Galonić Fujimori
Journal:  J Am Chem Soc       Date:  2010-03-24       Impact factor: 15.419

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