Literature DB >> 21580745

2-Amino-5-methyl-pyridinium 4-hydroxy-benzoate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title salt, C(6)H(9)N(2) (+)·C(7)H(5)O(3) (-), the carboxyl-ate mean plane of the 4-hydroxy-benzoate anion is twisted by 13.07 (4)° from the attached ring. In the crystal structure, the ions are linked into a two-dimensional network by N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds. Within this network, the N-H⋯O hydrogen bonds generate R(2) (2)(8) ring motifs. In addition, π-π inter-actions involving the pyridinium rings, with a centroid-centroid distance of 3.7599 (4) Å, are observed.

Entities:  

Year:  2010        PMID: 21580745      PMCID: PMC2983863          DOI: 10.1107/S1600536810009396

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶). For related structures, see: Hemamalini & Fun (2010a ▶,b ▶,c ▶). For 4-hydroxy­benzoic acid, see: Vishweshwar et al. (2003 ▶). For details of hydrogen bonding, see: Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶); Scheiner (1997 ▶); Aakeröy et al. (2002 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H9N2 +·C7H5O3 M = 246.26 Monoclinic, a = 12.9562 (6) Å b = 8.7876 (4) Å c = 11.3276 (5) Å β = 108.397 (1)° V = 1223.78 (10) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.39 × 0.33 × 0.27 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.963, T max = 0.975 20102 measured reflections 5326 independent reflections 4662 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.137 S = 1.15 5326 reflections 219 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.60 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810009396/rz2424sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810009396/rz2424Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H5O3F(000) = 520
Mr = 246.26Dx = 1.337 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9907 reflections
a = 12.9562 (6) Åθ = 6.5–36.2°
b = 8.7876 (4) ŵ = 0.10 mm1
c = 11.3276 (5) ÅT = 100 K
β = 108.397 (1)°Blcok, colourless
V = 1223.78 (10) Å30.39 × 0.33 × 0.27 mm
Z = 4
Bruker APEX DUO CCD area-detector diffractometer5326 independent reflections
Radiation source: fine-focus sealed tube4662 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 35.0°, θmin = 6.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −19→20
Tmin = 0.963, Tmax = 0.975k = −14→11
20102 measured reflectionsl = −18→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H atoms treated by a mixture of independent and constrained refinement
S = 1.15w = 1/[σ2(Fo2) + (0.0859P)2 + 0.1288P] where P = (Fo2 + 2Fc2)/3
5326 reflections(Δ/σ)max = 0.001
219 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.32 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.07705 (4)1.29454 (6)0.44060 (5)0.01923 (12)
O20.23879 (4)0.85691 (6)0.26656 (5)0.01752 (11)
O30.34273 (4)0.90704 (7)0.45979 (5)0.02001 (12)
C70.17088 (6)1.07237 (8)0.50635 (6)0.01751 (13)
C80.08861 (6)1.16244 (9)0.52300 (6)0.01815 (13)
C90.00128 (5)1.20628 (7)0.42014 (6)0.01493 (12)
C10−0.00280 (5)1.15864 (8)0.30079 (6)0.01519 (12)
C110.07897 (5)1.06554 (8)0.28576 (6)0.01482 (12)
C120.16699 (5)1.02150 (7)0.38786 (6)0.01410 (11)
C130.25438 (5)0.92210 (8)0.37051 (6)0.01435 (12)
N10.48836 (5)0.71343 (7)0.42194 (5)0.01544 (11)
N20.39201 (5)0.66496 (8)0.21647 (6)0.01851 (12)
C10.48185 (5)0.64504 (7)0.31296 (6)0.01461 (12)
C20.57195 (6)0.55617 (8)0.30846 (6)0.01732 (13)
C30.65954 (6)0.53911 (8)0.41374 (7)0.01848 (13)
C40.66298 (5)0.60787 (8)0.52806 (6)0.01614 (12)
C50.57535 (5)0.69542 (8)0.52670 (6)0.01641 (12)
C60.75785 (6)0.58625 (10)0.64330 (7)0.02191 (14)
H2A0.5718 (11)0.5103 (16)0.2257 (12)0.027 (3)*
H3A0.7256 (12)0.4762 (18)0.4148 (13)0.034 (3)*
H5A0.5712 (11)0.7533 (16)0.5988 (13)0.027 (3)*
H6A0.7657 (12)0.4804 (19)0.6662 (14)0.039 (4)*
H6B0.8244 (13)0.6124 (18)0.6294 (14)0.038 (4)*
H6C0.7483 (13)0.6507 (19)0.7124 (16)0.040 (4)*
H7A0.2334 (11)1.0425 (17)0.5794 (13)0.029 (3)*
H8A0.0899 (13)1.2010 (18)0.6068 (15)0.038 (4)*
H10A−0.0628 (12)1.1968 (16)0.2289 (14)0.030 (3)*
H11A0.0758 (10)1.0333 (15)0.2012 (11)0.021 (3)*
H101−0.1257 (15)1.3172 (19)0.3673 (16)0.045 (4)*
H1N10.4304 (13)0.7749 (19)0.4310 (14)0.038 (4)*
H1N20.3819 (12)0.6231 (15)0.1407 (13)0.028 (3)*
H2N20.3394 (11)0.7245 (15)0.2326 (12)0.025 (3)*
U11U22U33U12U13U23
O10.0165 (2)0.0239 (3)0.0175 (2)0.00637 (17)0.00561 (18)0.00151 (18)
O20.0140 (2)0.0240 (2)0.0143 (2)0.00056 (16)0.00405 (16)−0.00257 (17)
O30.0149 (2)0.0292 (3)0.0137 (2)0.00667 (18)0.00134 (16)−0.00034 (18)
C70.0160 (3)0.0233 (3)0.0122 (2)0.0047 (2)0.0029 (2)0.0015 (2)
C80.0176 (3)0.0240 (3)0.0124 (2)0.0053 (2)0.0041 (2)0.0011 (2)
C90.0131 (2)0.0166 (3)0.0150 (2)0.00114 (18)0.00441 (19)0.00139 (19)
C100.0128 (2)0.0175 (3)0.0136 (2)0.00088 (19)0.00182 (19)0.00068 (19)
C110.0137 (2)0.0171 (3)0.0126 (2)0.00074 (19)0.00256 (19)0.00033 (19)
C120.0123 (2)0.0169 (2)0.0127 (2)0.00125 (18)0.00344 (18)0.00125 (19)
C130.0125 (2)0.0180 (3)0.0127 (2)0.00072 (19)0.00415 (19)0.00162 (19)
N10.0147 (2)0.0176 (2)0.0136 (2)0.00132 (17)0.00391 (18)−0.00160 (17)
N20.0164 (2)0.0227 (3)0.0144 (2)0.00148 (19)0.00197 (19)−0.00235 (19)
C10.0152 (2)0.0154 (2)0.0135 (2)−0.00101 (18)0.0050 (2)−0.00051 (19)
C20.0187 (3)0.0187 (3)0.0155 (3)0.0024 (2)0.0067 (2)−0.0014 (2)
C30.0174 (3)0.0202 (3)0.0185 (3)0.0030 (2)0.0066 (2)−0.0001 (2)
C40.0144 (2)0.0177 (3)0.0158 (3)−0.0001 (2)0.0041 (2)0.0008 (2)
C50.0160 (3)0.0193 (3)0.0134 (2)0.0003 (2)0.0039 (2)−0.0015 (2)
C60.0163 (3)0.0271 (3)0.0193 (3)0.0001 (2)0.0013 (2)0.0036 (2)
O1—C91.3541 (8)N1—C51.3636 (9)
O1—H1010.893 (18)N1—H1N10.956 (16)
O2—C131.2670 (8)N2—C11.3331 (9)
O3—C131.2728 (8)N2—H1N20.904 (14)
C7—C81.3875 (9)N2—H2N20.922 (14)
C7—C121.4004 (9)C1—C21.4187 (9)
C7—H7A0.993 (14)C2—C31.3705 (10)
C8—C91.3978 (9)C2—H2A1.020 (13)
C8—H8A1.003 (15)C3—C41.4169 (10)
C9—C101.4003 (9)C3—H3A1.016 (15)
C10—C111.3909 (9)C4—C51.3675 (9)
C10—H10A0.990 (15)C4—C61.4962 (10)
C11—C121.3984 (9)C5—H5A0.978 (14)
C11—H11A0.987 (12)C6—H6A0.963 (16)
C12—C131.4912 (9)C6—H6B0.952 (16)
N1—C11.3516 (8)C6—H6C1.006 (17)
C9—O1—H101108.4 (11)C1—N2—H1N2123.5 (9)
C8—C7—C12121.04 (6)C1—N2—H2N2114.9 (8)
C8—C7—H7A119.8 (8)H1N2—N2—H2N2121.6 (12)
C12—C7—H7A119.1 (8)N2—C1—N1118.50 (6)
C7—C8—C9119.89 (6)N2—C1—C2123.94 (6)
C7—C8—H8A122.5 (9)N1—C1—C2117.56 (6)
C9—C8—H8A117.6 (9)C3—C2—C1119.59 (6)
O1—C9—C8117.93 (6)C3—C2—H2A121.2 (8)
O1—C9—C10122.31 (6)C1—C2—H2A119.2 (8)
C8—C9—C10119.76 (6)C2—C3—C4121.81 (6)
C11—C10—C9119.73 (6)C2—C3—H3A122.2 (8)
C11—C10—H10A122.0 (9)C4—C3—H3A116.0 (8)
C9—C10—H10A118.2 (9)C5—C4—C3116.31 (6)
C10—C11—C12121.02 (6)C5—C4—C6122.13 (6)
C10—C11—H11A119.2 (7)C3—C4—C6121.56 (6)
C12—C11—H11A119.7 (7)N1—C5—C4122.03 (6)
C11—C12—C7118.53 (6)N1—C5—H5A114.7 (8)
C11—C12—C13120.53 (6)C4—C5—H5A123.2 (8)
C7—C12—C13120.94 (6)C4—C6—H6A110.2 (9)
O2—C13—O3122.08 (6)C4—C6—H6B111.2 (9)
O2—C13—C12118.84 (6)H6A—C6—H6B104.7 (13)
O3—C13—C12119.08 (6)C4—C6—H6C109.8 (9)
C1—N1—C5122.65 (6)H6A—C6—H6C111.4 (13)
C1—N1—H1N1121.6 (9)H6B—C6—H6C109.5 (13)
C5—N1—H1N1115.7 (9)
C12—C7—C8—C9−1.35 (11)C11—C12—C13—O3166.93 (6)
C7—C8—C9—O1−179.81 (6)C7—C12—C13—O3−13.29 (10)
C7—C8—C9—C100.17 (11)C5—N1—C1—N2177.71 (6)
O1—C9—C10—C11−178.73 (6)C5—N1—C1—C2−2.43 (10)
C8—C9—C10—C111.29 (10)N2—C1—C2—C3−178.20 (7)
C9—C10—C11—C12−1.60 (10)N1—C1—C2—C31.94 (10)
C10—C11—C12—C70.44 (10)C1—C2—C3—C40.08 (11)
C10—C11—C12—C13−179.77 (6)C2—C3—C4—C5−1.66 (11)
C8—C7—C12—C111.05 (11)C2—C3—C4—C6178.74 (7)
C8—C7—C12—C13−178.74 (6)C1—N1—C5—C40.83 (11)
C11—C12—C13—O2−12.12 (10)C3—C4—C5—N11.25 (10)
C7—C12—C13—O2167.67 (6)C6—C4—C5—N1−179.16 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O30.957 (17)1.726 (17)2.6738 (9)170.4 (15)
N2—H1N2···O3i0.905 (14)1.967 (14)2.8443 (9)162.9 (13)
N2—H2N2···O20.922 (14)1.876 (14)2.7962 (9)176.1 (13)
O1—H101···O2ii0.892 (18)1.779 (18)2.6635 (8)170.7 (19)
C3—H3A···O2iii1.016 (16)2.476 (15)3.1887 (9)126.7 (10)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O30.957 (17)1.726 (17)2.6738 (9)170.4 (15)
N2—H1N2⋯O3i0.905 (14)1.967 (14)2.8443 (9)162.9 (13)
N2—H2N2⋯O20.922 (14)1.876 (14)2.7962 (9)176.1 (13)
O1—H101⋯O2ii0.892 (18)1.779 (18)2.6635 (8)170.7 (19)
C3—H3A⋯O2iii1.016 (16)2.476 (15)3.1887 (9)126.7 (10)

Symmetry codes: (i) ; (ii) ; (iii) .

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