| Literature DB >> 23476391 |
Kaliyaperumal Thanigaimani1, Abbas Farhadikoutenaei, Suhana Arshad, Ibrahim Abdul Razak.
Abstract
In the 5-chloro-salicylate anion of the title salt, C6H9N2(+)·C7H4ClO3(-), an intra-molecular O-H⋯O hydrogen bond with an S(6) graph-set motif is observed and the dihedral angle between the benzene ring and the -CO2 group is 1.6 (6)°. In the crystal, the protonated N atom and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms via a pair of N-H⋯O hydrogen bonds, forming an R2(2)(8) ring motif. The crystal structure also features N-H⋯O and weak C-H⋯O inter-actions, resulting in a layer parallel to (10-1).Entities:
Year: 2012 PMID: 23476391 PMCID: PMC3588363 DOI: 10.1107/S160053681205101X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C7H4ClO3− | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 1722 reflections |
| θ = 2.8–29.7° | |
| µ = 0.30 mm−1 | |
| β = 90.415 (16)° | Block, colourless |
| 0.46 × 0.18 × 0.07 mm | |
| Bruker SMART APEXII Duo CCD area-detector diffractometer | 2204 independent reflections |
| Radiation source: fine-focus sealed tube | 1539 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.0°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 4785 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2204 reflections | Δρmax = 0.47 e Å−3 |
| 189 parameters | Δρmin = −0.44 e Å−3 |
| 2 restraints | Absolute structure: Flack (1983), 941 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.09 (16) |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.49320 (17) | 0.7884 (3) | 0.59756 (12) | 0.0882 (6) | |
| O1 | 0.1352 (4) | 0.0724 (8) | 0.6317 (2) | 0.0718 (11) | |
| O2 | 0.1487 (4) | −0.0555 (7) | 0.7972 (2) | 0.0665 (10) | |
| O3 | 0.3088 (5) | 0.1483 (9) | 0.9319 (3) | 0.0809 (13) | |
| N1 | 0.9568 (5) | 0.6055 (9) | 0.7468 (3) | 0.0581 (11) | |
| N2 | 0.9360 (7) | 0.7221 (10) | 0.5745 (4) | 0.0730 (15) | |
| C1 | 0.8976 (5) | 0.5709 (10) | 0.6496 (3) | 0.0555 (13) | |
| C2 | 0.8031 (5) | 0.3909 (10) | 0.6344 (4) | 0.0613 (15) | |
| H2A | 0.7593 | 0.3646 | 0.5667 | 0.074* | |
| C3 | 0.7716 (6) | 0.2485 (12) | 0.7170 (4) | 0.0724 (17) | |
| H3A | 0.7049 | 0.1232 | 0.7056 | 0.087* | |
| C4 | 0.8336 (6) | 0.2786 (13) | 0.8183 (4) | 0.0683 (14) | |
| C5 | 0.9247 (6) | 0.4608 (11) | 0.8286 (4) | 0.0622 (14) | |
| H5A | 0.9688 | 0.4902 | 0.8959 | 0.075* | |
| C6 | 0.8003 (8) | 0.1215 (15) | 0.9103 (5) | 0.093 (2) | |
| H6A | 0.8451 | 0.1854 | 0.9750 | 0.139* | |
| H6B | 0.8416 | −0.0328 | 0.8966 | 0.139* | |
| H6C | 0.6925 | 0.1096 | 0.9191 | 0.139* | |
| C7 | 0.3500 (5) | 0.2962 (12) | 0.8536 (3) | 0.0604 (13) | |
| C8 | 0.4479 (6) | 0.4684 (11) | 0.8751 (4) | 0.0681 (16) | |
| H8A | 0.4865 | 0.4834 | 0.9450 | 0.082* | |
| C9 | 0.4933 (6) | 0.6238 (11) | 0.7977 (4) | 0.0666 (15) | |
| H9A | 0.5615 | 0.7446 | 0.8138 | 0.080* | |
| C10 | 0.4360 (5) | 0.5971 (11) | 0.6960 (4) | 0.0620 (13) | |
| C11 | 0.3378 (6) | 0.4262 (11) | 0.6724 (4) | 0.0581 (13) | |
| H11A | 0.3005 | 0.4116 | 0.6021 | 0.070* | |
| C12 | 0.2916 (5) | 0.2732 (11) | 0.7495 (3) | 0.0507 (11) | |
| C13 | 0.1848 (5) | 0.0861 (11) | 0.7244 (3) | 0.0579 (13) | |
| H1N1 | 1.019 (6) | 0.735 (11) | 0.754 (4) | 0.070 (17)* | |
| H1N2 | 0.985 (6) | 0.846 (7) | 0.587 (5) | 0.09 (3)* | |
| H2N2 | 0.888 (7) | 0.705 (14) | 0.517 (5) | 0.09 (2)* | |
| H1O3 | 0.225 (7) | 0.071 (13) | 0.909 (5) | 0.083 (19)* |
| Cl1 | 0.0888 (9) | 0.0908 (11) | 0.0850 (10) | −0.0173 (9) | 0.0112 (7) | 0.0067 (10) |
| O1 | 0.076 (2) | 0.099 (3) | 0.0404 (16) | −0.016 (2) | −0.0140 (14) | −0.001 (2) |
| O2 | 0.076 (2) | 0.080 (3) | 0.0430 (16) | −0.011 (2) | −0.0066 (14) | 0.0066 (19) |
| O3 | 0.103 (3) | 0.103 (4) | 0.0371 (17) | −0.013 (3) | −0.0145 (17) | 0.0037 (19) |
| N1 | 0.066 (2) | 0.068 (3) | 0.0402 (19) | −0.005 (2) | −0.0016 (16) | −0.002 (2) |
| N2 | 0.095 (3) | 0.082 (4) | 0.042 (2) | −0.012 (3) | −0.009 (2) | −0.009 (2) |
| C1 | 0.058 (3) | 0.070 (4) | 0.038 (2) | 0.004 (3) | 0.0016 (19) | −0.005 (3) |
| C2 | 0.067 (3) | 0.073 (4) | 0.044 (2) | −0.004 (3) | −0.003 (2) | −0.010 (3) |
| C3 | 0.070 (3) | 0.077 (5) | 0.070 (3) | −0.010 (3) | 0.004 (2) | −0.014 (3) |
| C4 | 0.067 (3) | 0.079 (4) | 0.059 (3) | 0.004 (3) | 0.007 (2) | −0.002 (3) |
| C5 | 0.076 (3) | 0.072 (4) | 0.038 (2) | 0.003 (3) | 0.001 (2) | 0.002 (2) |
| C6 | 0.108 (5) | 0.098 (5) | 0.072 (3) | −0.003 (4) | 0.014 (3) | 0.017 (4) |
| C7 | 0.058 (3) | 0.083 (4) | 0.040 (2) | 0.003 (3) | −0.0017 (18) | −0.006 (3) |
| C8 | 0.070 (3) | 0.087 (5) | 0.047 (2) | −0.002 (3) | −0.007 (2) | −0.016 (3) |
| C9 | 0.063 (3) | 0.068 (4) | 0.069 (3) | 0.000 (3) | 0.003 (2) | −0.018 (3) |
| C10 | 0.053 (2) | 0.075 (4) | 0.058 (3) | −0.005 (3) | 0.005 (2) | −0.004 (3) |
| C11 | 0.064 (3) | 0.069 (3) | 0.042 (2) | 0.003 (3) | 0.0054 (19) | −0.008 (2) |
| C12 | 0.048 (2) | 0.068 (3) | 0.036 (2) | 0.010 (3) | −0.0010 (15) | −0.009 (3) |
| C13 | 0.060 (3) | 0.069 (4) | 0.044 (2) | 0.000 (3) | −0.0012 (19) | 0.005 (3) |
| Cl1—C10 | 1.742 (6) | C4—C5 | 1.339 (9) |
| O1—C13 | 1.251 (5) | C4—C6 | 1.504 (9) |
| O2—C13 | 1.273 (6) | C5—H5A | 0.9500 |
| O3—C7 | 1.359 (7) | C6—H6A | 0.9800 |
| O3—H1O3 | 0.92 (7) | C6—H6B | 0.9800 |
| N1—C1 | 1.349 (6) | C6—H6C | 0.9800 |
| N1—C5 | 1.359 (7) | C7—C8 | 1.354 (9) |
| N1—H1N1 | 0.94 (6) | C7—C12 | 1.417 (6) |
| N2—C1 | 1.335 (7) | C8—C9 | 1.389 (8) |
| N2—H1N2 | 0.853 (10) | C8—H8A | 0.9500 |
| N2—H2N2 | 0.85 (7) | C9—C10 | 1.388 (7) |
| C1—C2 | 1.355 (8) | C9—H9A | 0.9500 |
| C2—C3 | 1.358 (8) | C10—C11 | 1.356 (8) |
| C2—H2A | 0.9500 | C11—C12 | 1.380 (8) |
| C3—C4 | 1.403 (8) | C11—H11A | 0.9500 |
| C3—H3A | 0.9500 | C12—C13 | 1.478 (8) |
| C7—O3—H1O3 | 107 (4) | C4—C6—H6C | 109.5 |
| C1—N1—C5 | 120.9 (5) | H6A—C6—H6C | 109.5 |
| C1—N1—H1N1 | 116 (3) | H6B—C6—H6C | 109.5 |
| C5—N1—H1N1 | 123 (3) | C8—C7—O3 | 119.7 (4) |
| C1—N2—H1N2 | 124 (4) | C8—C7—C12 | 119.4 (5) |
| C1—N2—H2N2 | 114 (5) | O3—C7—C12 | 120.9 (5) |
| H1N2—N2—H2N2 | 121 (7) | C7—C8—C9 | 121.8 (4) |
| N2—C1—N1 | 116.5 (5) | C7—C8—H8A | 119.1 |
| N2—C1—C2 | 124.5 (4) | C9—C8—H8A | 119.1 |
| N1—C1—C2 | 119.0 (5) | C10—C9—C8 | 118.0 (5) |
| C1—C2—C3 | 119.3 (5) | C10—C9—H9A | 121.0 |
| C1—C2—H2A | 120.4 | C8—C9—H9A | 121.0 |
| C3—C2—H2A | 120.4 | C11—C10—C9 | 121.4 (5) |
| C2—C3—C4 | 122.7 (6) | C11—C10—Cl1 | 120.0 (4) |
| C2—C3—H3A | 118.6 | C9—C10—Cl1 | 118.6 (5) |
| C4—C3—H3A | 118.6 | C10—C11—C12 | 120.6 (4) |
| C5—C4—C3 | 115.1 (5) | C10—C11—H11A | 119.7 |
| C5—C4—C6 | 121.6 (5) | C12—C11—H11A | 119.7 |
| C3—C4—C6 | 123.3 (6) | C11—C12—C7 | 118.8 (5) |
| C4—C5—N1 | 122.9 (5) | C11—C12—C13 | 121.0 (4) |
| C4—C5—H5A | 118.6 | C7—C12—C13 | 120.2 (5) |
| N1—C5—H5A | 118.6 | O1—C13—O2 | 122.9 (5) |
| C4—C6—H6A | 109.5 | O1—C13—C12 | 118.3 (4) |
| C4—C6—H6B | 109.5 | O2—C13—C12 | 118.8 (4) |
| H6A—C6—H6B | 109.5 | ||
| C5—N1—C1—N2 | −179.9 (5) | C8—C9—C10—Cl1 | −179.3 (4) |
| C5—N1—C1—C2 | 1.0 (7) | C9—C10—C11—C12 | 0.2 (8) |
| N2—C1—C2—C3 | −179.7 (5) | Cl1—C10—C11—C12 | 179.9 (4) |
| N1—C1—C2—C3 | −0.7 (8) | C10—C11—C12—C7 | −0.8 (7) |
| C1—C2—C3—C4 | −0.3 (9) | C10—C11—C12—C13 | −179.9 (5) |
| C2—C3—C4—C5 | 1.0 (9) | C8—C7—C12—C11 | 0.8 (7) |
| C2—C3—C4—C6 | −179.7 (6) | O3—C7—C12—C11 | −179.4 (5) |
| C3—C4—C5—N1 | −0.7 (8) | C8—C7—C12—C13 | 179.9 (5) |
| C6—C4—C5—N1 | 180.0 (5) | O3—C7—C12—C13 | −0.3 (7) |
| C1—N1—C5—C4 | −0.3 (8) | C11—C12—C13—O1 | −1.3 (7) |
| O3—C7—C8—C9 | 180.0 (5) | C7—C12—C13—O1 | 179.6 (5) |
| C12—C7—C8—C9 | −0.2 (8) | C11—C12—C13—O2 | 177.8 (4) |
| C7—C8—C9—C10 | −0.4 (8) | C7—C12—C13—O2 | −1.2 (7) |
| C8—C9—C10—C11 | 0.4 (8) |
| H··· | ||||
| O3—H1 | 0.92 (6) | 1.73 (7) | 2.512 (6) | 141 (6) |
| N1—H1 | 0.94 (6) | 1.76 (6) | 2.683 (7) | 166 (5) |
| N2—H1 | 0.85 (5) | 1.96 (5) | 2.793 (8) | 165 (4) |
| N2—H2 | 0.85 (6) | 2.04 (7) | 2.811 (6) | 152 (7) |
| C8—H8 | 0.95 | 2.58 | 3.425 (7) | 148 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H1 | 0.92 (6) | 1.73 (7) | 2.512 (6) | 141 (6) |
| N1—H1 | 0.94 (6) | 1.76 (6) | 2.683 (7) | 166 (5) |
| N2—H1 | 0.85 (5) | 1.96 (5) | 2.793 (8) | 165 (4) |
| N2—H2 | 0.85 (6) | 2.04 (7) | 2.811 (6) | 152 (7) |
| C8—H8 | 0.95 | 2.58 | 3.425 (7) | 148 |
Symmetry codes: (i) ; (ii) ; (iii) .