Literature DB >> 24764948

Di-chlorido-dimethyl-bis-(thio-urea-κS)tin(IV).

Yaya Sow1, Libasse Diop1, Manuel A Fernandes2, Helen Stoeckli-Evans3.   

Abstract

The title compound, [Sn(CH3)2Cl2(CH4N2S)2], crystallizes with two half-mol-ecules in the asymmetric unit. Both mol-ecules are completed by inversion symmetry with the two Sn(IV) atoms located on inversion centers. The metal atoms have distorted octa-hedral coordination environments defined by two Cl atoms, two C atoms of methyl groups and two thio-urea S atoms. In the crystal, mol-ecules are linked via N-H⋯Cl and N-H⋯S hydrogen bonds, forming a three-dimensional structure.

Entities:  

Year:  2014        PMID: 24764948      PMCID: PMC3998430          DOI: 10.1107/S1600536814002025

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications and biological activity of organotin(IV) compounds, see: Davies (2010 ▶); Evans & Karpel (1984 ▶); Hadjikakou & Hadjiliadis (2009 ▶). For the crystal structures of related compounds, see: Calogero et al. (1984 ▶); Sow et al. (2012 ▶, 2013 ▶).

Experimental

Crystal data

[Sn(CH3)2Cl2(CH4N2S)2] M = 371.90 Triclinic, a = 6.4461 (1) Å b = 8.4063 (2) Å c = 12.4249 (2) Å α = 82.172 (1)° β = 78.240 (1)° γ = 89.465 (1)° V = 652.89 (2) Å3 Z = 2 Mo Kα radiation μ = 2.65 mm−1 T = 296 K 0.32 × 0.19 × 0.06 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: integration (by face-indexing with XPREP; Bruker, 2005 ▶) T min = 0.533, T max = 0.827 12611 measured reflections 3250 independent reflections 2917 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.053 S = 1.06 3250 reflections 156 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.57 e Å−3 Δρmin = −0.54 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-NT (Bruker, 2005 ▶); data reduction: SAINT-NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL2013 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814002025/wm5003sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814002025/wm5003Isup2.hkl CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
[Sn(CH3)2Cl2(CH4N2S)2]Z = 2
Mr = 371.90F(000) = 364
Triclinic, P1Dx = 1.892 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.4461 (1) ÅCell parameters from 8182 reflections
b = 8.4063 (2) Åθ = 2.5–28.3°
c = 12.4249 (2) ŵ = 2.65 mm1
α = 82.172 (1)°T = 296 K
β = 78.240 (1)°Block, colourless
γ = 89.465 (1)°0.32 × 0.19 × 0.06 mm
V = 652.89 (2) Å3
Bruker APEXII CCD diffractometer3250 independent reflections
Radiation source: sealed tube2917 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.058
φ and ω scansθmax = 28.3°, θmin = 1.7°
Absorption correction: integration (face-indexed absorption correction carried out with XPREP; Bruker, 2005)h = −8→8
Tmin = 0.533, Tmax = 0.827k = −11→11
12611 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.021H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.053w = 1/[σ2(Fo2) + (0.0263P)2 + 0.0565P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
3250 reflectionsΔρmax = 0.57 e Å3
156 parametersΔρmin = −0.54 e Å3
8 restraintsExtinction correction: SHELXL2013 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: heavy-atom methodExtinction coefficient: 0.0077 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Sn10.50000.50000.50000.01799 (7)
Sn20.00000.00000.00000.01831 (7)
Cl10.70413 (9)0.23120 (6)0.47747 (4)0.03146 (13)
Cl2−0.11932 (8)0.29624 (5)−0.05524 (4)0.02409 (11)
S10.36555 (8)0.49581 (6)0.30643 (4)0.02033 (11)
S20.19978 (8)0.15451 (6)0.13272 (4)0.02269 (11)
N10.5850 (3)0.5545 (2)0.10178 (15)0.0250 (4)
H1A0.473 (3)0.606 (2)0.0937 (19)0.026 (6)*
H1B0.691 (3)0.561 (3)0.0492 (19)0.052 (9)*
N20.7433 (3)0.3848 (2)0.21896 (16)0.0300 (4)
H2A0.846 (3)0.385 (3)0.1668 (17)0.034 (7)*
H2B0.739 (4)0.333 (3)0.2837 (15)0.030 (6)*
N30.2675 (3)0.0996 (2)0.33626 (16)0.0313 (4)
H3A0.283 (4)0.197 (2)0.334 (2)0.030 (7)*
H3B0.290 (4)0.040 (3)0.3937 (16)0.036 (7)*
N40.1851 (3)−0.1227 (2)0.26787 (15)0.0261 (4)
H4A0.198 (4)−0.169 (3)0.3298 (15)0.030 (6)*
H4B0.166 (4)−0.169 (3)0.2126 (16)0.026 (6)*
C10.5832 (3)0.4767 (2)0.20191 (16)0.0202 (4)
C20.2200 (3)0.3664 (3)0.58135 (18)0.0294 (5)
H2D0.25680.25920.60750.044*
H2E0.12750.36260.53020.044*
H2F0.14940.41720.64310.044*
C30.2172 (3)0.0340 (2)0.25425 (16)0.0200 (4)
C40.2713 (3)0.0400 (3)−0.12940 (17)0.0261 (4)
H4D0.34320.1368−0.12330.039*
H4E0.22900.0503−0.19970.039*
H4F0.3648−0.0489−0.12390.039*
U11U22U33U12U13U23
Sn10.01928 (10)0.01734 (10)0.01622 (10)−0.00096 (7)−0.00255 (7)0.00007 (7)
Sn20.01640 (10)0.01877 (10)0.01806 (11)0.00430 (7)−0.00106 (7)−0.00052 (7)
Cl10.0455 (3)0.0274 (3)0.0217 (3)0.0133 (2)−0.0094 (2)−0.0012 (2)
Cl20.0289 (3)0.0200 (2)0.0240 (3)0.00809 (19)−0.0076 (2)−0.00258 (19)
S10.0230 (2)0.0217 (2)0.0166 (2)0.00450 (19)−0.00449 (18)−0.00357 (18)
S20.0292 (3)0.0181 (2)0.0216 (2)0.00022 (19)−0.0098 (2)0.00136 (19)
N10.0265 (9)0.0296 (9)0.0183 (9)0.0052 (8)−0.0047 (7)−0.0009 (7)
N20.0308 (10)0.0398 (11)0.0181 (9)0.0166 (8)−0.0029 (8)−0.0037 (8)
N30.0539 (13)0.0191 (9)0.0235 (10)−0.0018 (9)−0.0149 (9)−0.0005 (8)
N40.0379 (10)0.0195 (9)0.0221 (10)−0.0003 (7)−0.0115 (8)0.0012 (7)
C10.0258 (10)0.0181 (9)0.0173 (9)0.0014 (8)−0.0052 (7)−0.0039 (7)
C20.0271 (11)0.0343 (12)0.0244 (11)−0.0083 (9)−0.0016 (9)−0.0003 (9)
C30.0182 (9)0.0201 (9)0.0215 (10)0.0036 (7)−0.0037 (7)−0.0020 (8)
C40.0232 (10)0.0272 (10)0.0247 (11)0.0024 (8)0.0014 (8)−0.0021 (9)
Sn1—C2i2.127 (2)N1—H1B0.838 (17)
Sn1—C22.127 (2)N2—C11.318 (3)
Sn1—Cl1i2.6234 (5)N2—H2A0.828 (16)
Sn1—Cl12.6234 (5)N2—H2B0.855 (16)
Sn1—S12.7221 (5)N3—C31.319 (3)
Sn1—S1i2.7222 (5)N3—H3A0.818 (16)
Sn2—C42.115 (2)N3—H3B0.853 (16)
Sn2—C4ii2.115 (2)N4—C31.318 (3)
Sn2—Cl2ii2.6416 (4)N4—H4A0.835 (16)
Sn2—Cl22.6416 (4)N4—H4B0.863 (15)
Sn2—S2ii2.7468 (5)C2—H2D0.9600
Sn2—S22.7468 (5)C2—H2E0.9600
S1—C11.729 (2)C2—H2F0.9600
S2—C31.723 (2)C4—H4D0.9600
N1—C11.322 (3)C4—H4E0.9600
N1—H1A0.853 (15)C4—H4F0.9600
C2i—Sn1—C2180.0C3—S2—Sn2112.12 (7)
C2i—Sn1—Cl1i89.90 (7)C1—N1—H1A116.1 (16)
C2—Sn1—Cl1i90.10 (7)C1—N1—H1B124 (2)
C2i—Sn1—Cl190.10 (7)H1A—N1—H1B120 (2)
C2—Sn1—Cl189.90 (7)C1—N2—H2A117.5 (18)
Cl1i—Sn1—Cl1180.00 (2)C1—N2—H2B118.6 (16)
C2i—Sn1—S192.49 (6)H2A—N2—H2B124 (2)
C2—Sn1—S187.51 (6)C3—N3—H3A123.0 (17)
Cl1i—Sn1—S188.204 (15)C3—N3—H3B119.6 (17)
Cl1—Sn1—S191.796 (15)H3A—N3—H3B117 (2)
C2i—Sn1—S1i87.51 (6)C3—N4—H4A114.2 (16)
C2—Sn1—S1i92.49 (6)C3—N4—H4B119.5 (16)
Cl1i—Sn1—S1i91.795 (15)H4A—N4—H4B126 (2)
Cl1—Sn1—S1i88.204 (15)N2—C1—N1119.65 (19)
S1—Sn1—S1i180.0N2—C1—S1121.92 (15)
C4—Sn2—C4ii180.0N1—C1—S1118.41 (15)
C4—Sn2—Cl2ii90.67 (6)Sn1—C2—H2D109.5
C4ii—Sn2—Cl2ii89.33 (6)Sn1—C2—H2E109.5
C4—Sn2—Cl289.33 (6)H2D—C2—H2E109.5
C4ii—Sn2—Cl290.67 (6)Sn1—C2—H2F109.5
Cl2ii—Sn2—Cl2180.00 (2)H2D—C2—H2F109.5
C4—Sn2—S2ii90.20 (6)H2E—C2—H2F109.5
C4ii—Sn2—S2ii89.80 (6)N4—C3—N3118.47 (18)
Cl2ii—Sn2—S2ii81.026 (14)N4—C3—S2122.29 (15)
Cl2—Sn2—S2ii98.974 (14)N3—C3—S2119.23 (15)
C4—Sn2—S289.80 (6)Sn2—C4—H4D109.5
C4ii—Sn2—S290.20 (6)Sn2—C4—H4E109.5
Cl2ii—Sn2—S298.975 (14)H4D—C4—H4E109.5
Cl2—Sn2—S281.025 (14)Sn2—C4—H4F109.5
S2ii—Sn2—S2180.0H4D—C4—H4F109.5
C1—S1—Sn1108.77 (6)H4E—C4—H4F109.5
Sn1—S1—C1—N237.99 (18)Sn2—S2—C3—N415.2 (2)
Sn1—S1—C1—N1−143.46 (14)Sn2—S2—C3—N3−165.86 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl2iii0.85 (2)2.53 (2)3.3703 (19)168 (2)
N1—H1B···Cl2iv0.84 (2)2.87 (2)3.4224 (19)125 (2)
N2—H2A···Cl2iv0.83 (2)2.92 (2)3.5205 (19)131 (2)
N2—H2A···S2iv0.83 (2)2.98 (2)3.5677 (19)130 (2)
N2—H2B···Cl10.86 (2)2.41 (2)3.255 (2)170 (2)
N3—H3A···S10.82 (2)2.54 (2)3.3522 (19)173 (2)
N3—H3B···Cl1v0.85 (2)2.60 (2)3.396 (2)155 (2)
N4—H4A···Cl1v0.84 (2)2.58 (2)3.3876 (18)162 (2)
N4—H4B···Cl2ii0.86 (2)2.42 (2)3.2871 (18)179 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯Cl2i 0.85 (2)2.53 (2)3.3703 (19)168 (2)
N1—H1B⋯Cl2ii 0.84 (2)2.87 (2)3.4224 (19)125 (2)
N2—H2A⋯Cl2ii 0.83 (2)2.92 (2)3.5205 (19)131 (2)
N2—H2A⋯S2ii 0.83 (2)2.98 (2)3.5677 (19)130 (2)
N2—H2B⋯Cl10.86 (2)2.41 (2)3.255 (2)170 (2)
N3—H3A⋯S10.82 (2)2.54 (2)3.3522 (19)173 (2)
N3—H3B⋯Cl1iii 0.85 (2)2.60 (2)3.396 (2)155 (2)
N4—H4A⋯Cl1iii 0.84 (2)2.58 (2)3.3876 (18)162 (2)
N4—H4B⋯Cl2iv 0.86 (2)2.42 (2)3.2871 (18)179 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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