Literature DB >> 31391957

Synthesis, structure determination and characterization by UV-Vis and IR spectroscopy of bis-(diiso-propyl-ammonium) cis-di-chlorido-bis(oxalato-κ2 O 1,O 2)stannate(IV).

Bougar Sarr1, Abdou Mbaye2, Cheikh Abdoul Khadir Diop1, Mamadou Sidibe1, Yoann Rousselin3.   

Abstract

The organic-inorganic title salt, (C6H16N)2[Sn(C2O4)2Cl2] or ( i Pr2NH2)2[Sn(C2O4)2Cl2], was obtained by reacting bis-(diiso-propyl-ammonium) oxalate with tin(IV) chloride dihydrate in methanol. The SnIV atom is coordinated by two chelating oxalate ligands and two chloride ions in cis positions, giving rise to an [Sn(C2O4)2Cl2]2- anion (point group symmetry 2), with the SnIV atom in a slightly distorted octa-hedral coordination. The cohesion of the crystal structure is ensured by the formation of N-H⋯O hydrogen bonding between (iPr2NH2)+ cations and [SnCl2(C2O4)2]2- anions. This gives rise to an infinite chain structure extending parallel to [101]. The main inter-chain inter-actions are van der Waals forces. The electronic spectrum of the title compound displays only one high intensity band in the UV region assignable to ligand-metal ion charge-transfer (LMCT) transitions. An IR spectrum was also recorded and is discussed.

Entities:  

Keywords:  crystal structure; hydrogen bonding; spectroscopic studies; tin(IV) oxalate derivative

Year:  2019        PMID: 31391957      PMCID: PMC6658980          DOI: 10.1107/S2056989019006030

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

As a result of their numerous applications in medicine, industry and agriculture (Kapoor et al., 2005 ▸), tin(IV) carboxyl­ate compounds have attracted the attention of several research groups, resulting in the preparation and characterization of new compounds (Christie et al., 1979 ▸; Ng & Kumar Das, 1993 ▸; Rocamora-Reverte et al., 2012 ▸; Reichelt & Reuter, 2014 ▸). Derivatives of tin(IV) oxalate are a subclass of the tin(IV) carboxyl­ate family and have likewise been studied extensively because oxalate ions, C2O4 2–, play an important role as counter-ions or complex ligands in inorganic as well as in organometallic chemistry. One of the motivations to study these compounds is related to the rich coordinating behaviour of the oxalato ligand, which can adopt a monodentate, a bridging monodentate, a bridging bidentate, a monochelating, bidentate or a bichelating mode (Miskelly et al., 1983 ▸; Sow et al., 2012 ▸; Świtlicka-Olszewska et al., 2014 ▸). In this context, our group has previously published the syntheses and crystal structure determinations of some tin(IV) oxalate derivatives (Sarr et al., 2013 ▸, 2018 ▸). As a continuation of this work, we have studied the inter­action between bis­(diiso­propyl­ammonium) oxalate with tin(IV) chloride dihydrate, which yielded the title salt (C6H16N)2[Sn(C2O4)2Cl2] or (Pr2NH2)2[Sn(C2O4)2Cl2]. Its crystal structure was determined by single crystal X-ray diffraction and was confirmed by infrared and UV–visible spectroscopic studies.

Structural commentary

The asymmetric unit of (Pr2NH2)2[Sn(C2O4)2Cl2] comprises one diiso­propyl­ammonium cation and one half of an [Sn(C2O4)2Cl2]2− anion, the other half being completed by the application of twofold rotation symmetry (Fig. 1 ▸) with the rotation axis running through the central SnIV atom. The latter is chelated by two oxalate ligands and is additionally ligated by two Cl atoms in cis positions within a distorted octa­hedral coordination sphere [Cl1i—Sn1—Cl1= 97.26 (4)°; O1—Sn1—O4 = O1i—Sn1—O4i = 79.27 (6) °, O1—Sn1—O4i = 90.21 (6)°; symmetry code: (i) x + , −y + , z − ]. Atoms Cl1i, O1, O1i and O4 define the equatorial plane [with a slight shift of Sn1 from this plane by 0.1163 (5) Å; rms = 0.0687 Å] while Cl1 and O4i occupy the axial positions. The O4i—Sn1—Cl1 angle of 168.50 (4)° indicates a considerable deviation from linearity, which might be explained by the difference in size of the Cl and O atoms and by the small bite angle of 79.27 (6)° between the central SnIV atom and the chelating O1 and O4 atoms.
Figure 1

The mol­ecular entities in the organic–inorganic title salt drawn with displacement ellipsoids at the 50% probability level; hydrogen atoms are depicted as spheres of arbitrary radius

As in the related structure of (Pr2NH2)2[Sn(C2O4)2I2] (Sarr et al., 2018 ▸), the lengths of the C—O bonds within the oxalate ligands vary slightly because of the different functions of the oxygen atoms involved in the coordination of SnIV. The C—O bond lengths of coordinating O atoms [O1—C7 = 1.289 (2) Å; O4—C8 = 1.289 (2) Å] are significantly longer than those of non-coordinating O atoms [O2—C7 = 1.222 (2) Å, O3—C8 = 1.223 (2) Å]. The Sn1—C1l distance of 2.3422 (9) Å as well as the Sn—O distances of 2.0710 (16) Å (O1) and of 2.1057 (15) Å (O4) are slightly shorter than corresponding bonds reported previously (Reichelt & Reuter, 2014 ▸; Sarr et al., 2013 ▸; Diop et al., 2011 ▸; Sow et al., 2013 ▸; Skapski et al., 1974 ▸).

Supra­molecular features

Each anionic complex [Sn(C2O4)2Cl2]2– is linked to two neighbours via four diiso­propyl­ammonium cations through N—H⋯O hydrogen bonds, leading to infinite chains parallel to [101] (Table 1 ▸, Fig. 2 ▸). In a chain, the two non-coordinating oxygen atoms (O2 and O3) of each oxalate ligand are involved as acceptors in hydrogen-bonding inter­actions (Table 1 ▸). The chains are arranged into layers extending parallel to (010), mainly inter­connected by van der Waals forces (Fig. 3 ▸).
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O3i 0.912.052.943 (2)167
N1—H1B⋯O2ii 0.911.952.855 (2)177

Symmetry codes: (i) ; (ii) .

Figure 2

An infinite chain in the title structure, showing the N—H⋯O hydrogen bonds as light-blue dashed lines. C-bound H atoms have been omitted for clarity.

Figure 3

The crystal packing of the title compound in a view down [001]. C-bound H atoms have been omitted for clarity.

Database survey

A search in the Cambridge Structural Database (CSD, version 5.40, update Nov. 2018; Groom et al., 2016 ▸) resulted in 226 hits dealing with diiso­propyl­ammonium cations while only one hit deals with the [Sn(C2O4)2Cl2]2– anion (Sarr et al., 2013 ▸).

Synthesis and crystallization

The title salt was obtained by mixing bis­(diiso­propyl­ammonium) oxalate (Pr2NH2)2C2O4; 0.30 g; 15.50 mmol) and tin(IV) chloride dihydrate (SnCl2·2H2O; (0.34 g; 15.50 mmol) in a 1:1 molar ratio in methanol. The obtained yellow solution was stirred for one h and then filtered. Colourless prism-like crystals were obtained by slow evaporation of the filtrate over a period of ten days. The IR spectrum confirms the presence of oxalate and diiso­propyl­ammonium groups in the title salt. In addition, the appearance of valence vibrations (–CO2) in the form of three bands shows that the oxalate ligands are not centrosymmetric, in agreement with the difference in the C—O bond lengths revealed by the X-ray study. Attributions of the vibrational bands of the title compound were made by comparison with previous studies (Sarr et al., 2018 ▸; Marinescu et al., 2002 ▸; Li et al., 2008 ▸). The vibrational bands at 3061 and 1579 cm−1 in the IR spectrum (Fig. 4 ▸) are assigned to the stretching and deformation modes ν(N—H) and δ(N—H), respectively, of –NH2– in the ammonium group. The bands at 1675, 1375 and 1251 cm−1 are attributed to the asymmetric and symmetric vibrations of the oxalateCO2 moiety while that at 795 cm−1 corresponds to the deformation vibrations δ(C—O) (Sarr et al., 2018 ▸; Marinescu et al., 2002 ▸; Li et al., 2008 ▸). The frequencies of stretching vibrations of the oxalate group often show slight deviations owing to the different coordination modes. The bands at 2882 cm−1 are assigned to the valence vibrations ν(C—H) and those at 1486 cm−1 to the deformation vibrations δ(C—H).
Figure 4

The IR spectrum of the title compound.

The electronic spectrum of the title compound is shown in Fig. 5 ▸. In the ultraviolet region, only one strong absorption band with a shoulder is observed. Generally, only π→π*, n→π* and LMCT transitions can be observed in the ultraviolet–visible (UV–Vis) region. The σ→σ* transition requires an absorption of a photon with a wavelength which does not fall in the UV–Vis range. Thus, this strong absorption band at 320 nm (Fig. 5 ▸) may be assigned to ligand-metal ion charge transfer (LMCT) (Kane et al., 2016 ▸). However, as the ligand-based π→π* / n→π* transitions absorb in the same area as the LMCT transitions, we cannot exclude a possibility of superposition of these transitions (ligand-based and LMCT) owing to the form of the absorption band (Ford & Vogler, 1993 ▸; Filho et al., 2000 ▸). In the title compound, the SnIV atom is surrounded by electron rich ligands (chlorido and oxalato), and π→π* and n→π* transitions may result from the non-binding electron pairs present on chlorine atoms or oxygen atoms of oxalate (Wojciechowska et al., 2016 ▸).
Figure 5

The electronic spectrum of the title compound.

Refinement details

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. All H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms, with a N—H distance of 0.91 Å, Cmeth­yl—H = 0.98 Å and Cmethine = 1.0 Å, and with U iso(H) = 1.2U eq (C,N) or 1.5U eq(Cmeth­yl). Three reflections were omitted from refinement because they were obstructed by the beam stop.
Table 2

Experimental details

Crystal data
Chemical formula(C6H16N)2[Sn(C2ClO4)2]
M r 570.02
Crystal system, space groupMonoclinic, C2/c
Temperature (K)100
a, b, c (Å)16.275 (8), 13.581 (6), 11.116 (4)
β (°)98.40 (3)
V3)2430.7 (18)
Z 4
Radiation typeMo Kα
μ (mm−1)1.31
Crystal size (mm)0.56 × 0.30 × 0.22
 
Data collection
DiffractometerBruker D8 VENTURE
Absorption correctionMulti-scan (SADABS; Bruker, 2015)
T min, T max 0.626, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections14360, 2800, 2597
R int 0.023
(sin θ/λ)max−1)0.650
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.023, 0.055, 1.28
No. of reflections2800
No. of parameters136
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)1.01, −0.59

Computer programs: APEX3 and SAINT (Bruker, 2015 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸), and OLEX2 (Dolomanov et al., 2009 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989019006030/wm5500sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989019006030/wm5500Isup2.hkl CCDC reference: 1833609 Additional supporting information: crystallographic information; 3D view; checkCIF report
(C6H16N)2[Sn(C2ClO4)2]F(000) = 1160
Mr = 570.02Dx = 1.558 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 16.275 (8) ÅCell parameters from 7290 reflections
b = 13.581 (6) Åθ = 3.0–27.5°
c = 11.116 (4) ŵ = 1.31 mm1
β = 98.40 (3)°T = 100 K
V = 2430.7 (18) Å3Plate, clear light colourless
Z = 40.56 × 0.30 × 0.22 mm
Bruker D8 VENTURE diffractometer2800 independent reflections
Radiation source: X-ray tube, Siemens KFF Mo 2K-90C2597 reflections with I > 2σ(I)
TRIUMPH curved crystal monochromatorRint = 0.023
Detector resolution: 1024 pixels mm-1θmax = 27.5°, θmin = 3.0°
φ and ω scans'h = −20→21
Absorption correction: multi-scan (SADABS; Bruker, 2015)k = −17→17
Tmin = 0.626, Tmax = 0.746l = −14→14
14360 measured reflections
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.023H-atom parameters constrained
wR(F2) = 0.055w = 1/[σ2(Fo2) + (0.011P)2 + 6.1885P] where P = (Fo2 + 2Fc2)/3
S = 1.28(Δ/σ)max = 0.002
2800 reflectionsΔρmax = 1.01 e Å3
136 parametersΔρmin = −0.59 e Å3
0 restraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Sn10.50000.67465 (2)0.75000.01307 (6)
Cl10.55290 (4)0.56066 (4)0.89962 (5)0.02556 (12)
O10.38232 (9)0.69379 (11)0.79635 (12)0.0158 (3)
O20.31479 (8)0.77413 (11)0.92602 (12)0.0165 (3)
O30.46345 (9)0.85537 (11)1.03026 (12)0.0159 (3)
O40.52285 (9)0.78744 (10)0.88059 (12)0.0147 (3)
C70.37835 (11)0.75429 (14)0.88463 (16)0.0117 (3)
C80.46144 (11)0.80483 (14)0.93878 (17)0.0121 (4)
N10.82801 (10)0.66470 (12)0.67738 (14)0.0117 (3)
H1A0.86400.66180.62200.014*
H1B0.78240.69830.64210.014*
C10.80130 (13)0.56088 (15)0.70045 (19)0.0180 (4)
H10.76080.56260.75990.022*
C20.87571 (16)0.49960 (18)0.7530 (2)0.0317 (6)
H2A0.85800.43170.76430.048*
H2B0.90030.52710.83160.048*
H2C0.91700.50040.69700.048*
C30.75809 (16)0.52045 (17)0.5802 (2)0.0268 (5)
H3A0.71130.56320.54900.040*
H3B0.73760.45390.59260.040*
H3C0.79750.51810.52150.040*
C40.86854 (12)0.72450 (16)0.78415 (18)0.0163 (4)
H40.92280.69340.81760.020*
C50.88477 (14)0.82664 (16)0.7363 (2)0.0225 (4)
H5A0.91790.82090.66980.034*
H5B0.91510.86620.80200.034*
H5C0.83170.85860.70630.034*
C60.81368 (14)0.72851 (18)0.88350 (19)0.0231 (5)
H6A0.75820.75180.84910.035*
H6B0.83800.77380.94760.035*
H6C0.80940.66260.91790.035*
U11U22U33U12U13U23
Sn10.01120 (10)0.01596 (10)0.01279 (10)0.0000.00420 (6)0.000
Cl10.0335 (3)0.0221 (3)0.0217 (2)0.0028 (2)0.0062 (2)0.0098 (2)
O10.0111 (6)0.0235 (7)0.0134 (6)−0.0049 (6)0.0037 (5)−0.0063 (6)
O20.0099 (6)0.0262 (8)0.0139 (7)−0.0022 (6)0.0035 (5)−0.0046 (6)
O30.0147 (7)0.0193 (7)0.0130 (6)−0.0013 (6)0.0001 (5)−0.0048 (5)
O40.0138 (7)0.0166 (7)0.0146 (7)−0.0011 (5)0.0056 (5)−0.0016 (5)
C70.0112 (8)0.0143 (9)0.0095 (8)−0.0013 (7)0.0009 (7)0.0026 (7)
C80.0088 (8)0.0143 (9)0.0125 (8)−0.0005 (7)−0.0008 (7)0.0032 (7)
N10.0115 (7)0.0134 (8)0.0100 (7)0.0003 (6)0.0013 (6)0.0021 (6)
C10.0200 (10)0.0132 (9)0.0211 (10)−0.0016 (8)0.0040 (8)0.0049 (8)
C20.0323 (13)0.0207 (11)0.0403 (14)0.0066 (10)−0.0010 (11)0.0129 (10)
C30.0327 (13)0.0165 (10)0.0312 (12)−0.0058 (9)0.0042 (10)−0.0029 (9)
C40.0118 (9)0.0227 (10)0.0131 (9)−0.0002 (8)−0.0030 (7)−0.0018 (8)
C50.0213 (11)0.0208 (10)0.0246 (11)−0.0058 (9)0.0006 (8)−0.0019 (9)
C60.0250 (11)0.0294 (12)0.0144 (10)0.0001 (9)0.0016 (8)−0.0015 (8)
Sn1—Cl12.3422 (9)C1—C31.519 (3)
Sn1—Cl1i2.3422 (9)C2—H2A0.9800
Sn1—O12.0710 (16)C2—H2B0.9800
Sn1—O1i2.0711 (16)C2—H2C0.9800
Sn1—O4i2.1057 (15)C3—H3A0.9800
Sn1—O42.1058 (15)C3—H3B0.9800
O1—C71.289 (2)C3—H3C0.9800
O2—C71.222 (2)C4—H41.0000
O3—C81.223 (2)C4—C51.523 (3)
O4—C81.289 (2)C4—C61.519 (3)
C7—C81.557 (3)C5—H5A0.9800
N1—H1A0.9100C5—H5B0.9800
N1—H1B0.9100C5—H5C0.9800
N1—C11.508 (3)C6—H6A0.9800
N1—C41.508 (2)C6—H6B0.9800
C1—H11.0000C6—H6C0.9800
C1—C21.514 (3)
Cl1i—Sn1—Cl197.26 (4)C2—C1—C3112.4 (2)
O1—Sn1—Cl199.42 (5)C3—C1—H1109.0
O1—Sn1—Cl1i90.13 (5)C1—C2—H2A109.5
O1i—Sn1—Cl190.13 (5)C1—C2—H2B109.5
O1i—Sn1—Cl1i99.42 (5)C1—C2—H2C109.5
O1—Sn1—O1i165.59 (8)H2A—C2—H2B109.5
O1—Sn1—O479.27 (6)H2A—C2—H2C109.5
O1—Sn1—O4i90.21 (6)H2B—C2—H2C109.5
O1i—Sn1—O4i79.27 (6)C1—C3—H3A109.5
O1i—Sn1—O490.21 (6)C1—C3—H3B109.5
O4i—Sn1—Cl1168.50 (4)C1—C3—H3C109.5
O4—Sn1—Cl1i168.49 (4)H3A—C3—H3B109.5
O4i—Sn1—Cl1i88.95 (5)H3A—C3—H3C109.5
O4—Sn1—Cl188.95 (5)H3B—C3—H3C109.5
O4i—Sn1—O486.66 (8)N1—C4—H4109.0
C7—O1—Sn1114.87 (12)N1—C4—C5107.09 (16)
C8—O4—Sn1114.04 (12)N1—C4—C6110.83 (17)
O1—C7—C8115.98 (16)C5—C4—H4109.0
O2—C7—O1124.51 (18)C6—C4—H4109.0
O2—C7—C8119.50 (17)C6—C4—C5111.83 (18)
O3—C8—O4126.25 (18)C4—C5—H5A109.5
O3—C8—C7119.01 (17)C4—C5—H5B109.5
O4—C8—C7114.74 (16)C4—C5—H5C109.5
H1A—N1—H1B107.1H5A—C5—H5B109.5
C1—N1—H1A107.7H5A—C5—H5C109.5
C1—N1—H1B107.7H5B—C5—H5C109.5
C4—N1—H1A107.7C4—C6—H6A109.5
C4—N1—H1B107.7C4—C6—H6B109.5
C4—N1—C1118.25 (15)C4—C6—H6C109.5
N1—C1—H1109.0H6A—C6—H6B109.5
N1—C1—C2110.20 (18)H6A—C6—H6C109.5
N1—C1—C3107.23 (16)H6B—C6—H6C109.5
C2—C1—H1109.0
Sn1—O1—C7—O2−178.95 (15)O2—C7—C8—O37.8 (3)
Sn1—O1—C7—C81.7 (2)O2—C7—C8—O4−172.75 (17)
Sn1—O4—C8—O3168.18 (16)C1—N1—C4—C5−177.16 (17)
Sn1—O4—C8—C7−11.23 (19)C1—N1—C4—C6−54.9 (2)
O1—C7—C8—O3−172.83 (17)C4—N1—C1—C2−60.8 (2)
O1—C7—C8—O46.6 (2)C4—N1—C1—C3176.56 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O3ii0.912.052.943 (2)167
N1—H1B···O2i0.911.952.855 (2)177
  10 in total

1.  [Observations by electron microscopy of 5'-nucleotidase activity at the level of biliary canaliculi and of plasma membranes isolated from mouse liver].

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Journal:  C R Acad Hebd Seances Acad Sci D       Date:  1974-03-04

2.  A series of manganese-carboxylate coordination polymers exhibiting diverse magnetic properties.

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3.  Bis(dimethyl-ammonium) tetra-chlorido-dimethyl-stannate(IV).

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4.  Tris(cyclo-hexyl-ammonium) cis-di-chlorido-bis-(oxalato-κ(2) O (1),O (2))stann-ate(IV) chloride monohydrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-05

5.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

6.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

7.  μ(2)-Oxalato-bis-[triphen-yl(thio-urea-κS)tin(IV)].

Authors:  Yaya Sow; Libasse Diop; Kieran C Molloy; Gabrielle Kociok-Kohn
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06

8.  Tetra-methyl-ammonium aqua-trichlorido-oxalatostannate(IV) monohydrate.

Authors:  Yaya Sow; Libasse Diop; Kieran C Molloy; Gabriele Kociok-Köhn
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-16

9.  catena-Poly[[di-tert-butyl-tin(IV)]-μ-oxalato].

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10.  The Cambridge Structural Database.

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  10 in total

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