Literature DB >> 24584091

Manipulating nuclear architecture.

Wulan Deng1, Gerd A Blobel2.   

Abstract

The eukaryotic genome is highly organized in the nucleus. Genes can be localized to specific nuclear compartments in a manner reflecting their activity. A plethora of recent reports has described multiple levels of chromosomal folding that can be related to gene-specific expression states. Here we discuss studies designed to probe the causal impact of genome organization on gene expression. The picture that emerges is that of a reciprocal relationship in which nuclear organization is not only shaped by gene expression states but also directly influences them.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24584091      PMCID: PMC4035372          DOI: 10.1016/j.gde.2013.10.014

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  60 in total

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Authors:  Tokameh Mahmoudi; Katerina R Katsani; C Peter Verrijzer
Journal:  EMBO J       Date:  2002-04-02       Impact factor: 11.598

2.  Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors:  Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

3.  DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina.

Authors:  Joseph M Zullo; Ignacio A Demarco; Roger Piqué-Regi; Daniel J Gaffney; Charles B Epstein; Chauncey J Spooner; Teresa R Luperchio; Bradley E Bernstein; Jonathan K Pritchard; Karen L Reddy; Harinder Singh
Journal:  Cell       Date:  2012-06-22       Impact factor: 41.582

4.  CTCF binding and higher order chromatin structure of the H19 locus are maintained in mitotic chromatin.

Authors:  Les J Burke; Ru Zhang; Marek Bartkuhn; Vijay K Tiwari; Gholamreza Tavoosidana; Sreenivasulu Kurukuti; Christine Weth; Joerg Leers; Niels Galjart; Rolf Ohlsson; Rainer Renkawitz
Journal:  EMBO J       Date:  2005-08-18       Impact factor: 11.598

5.  Chromatin position effects assayed by thousands of reporters integrated in parallel.

Authors:  Waseem Akhtar; Johann de Jong; Alexey V Pindyurin; Ludo Pagie; Wouter Meuleman; Jeroen de Ridder; Anton Berns; Lodewyk F A Wessels; Maarten van Lohuizen; Bas van Steensel
Journal:  Cell       Date:  2013-08-15       Impact factor: 41.582

6.  Characterization of the Drosophila melanogaster genome at the nuclear lamina.

Authors:  Helen Pickersgill; Bernike Kalverda; Elzo de Wit; Wendy Talhout; Maarten Fornerod; Bas van Steensel
Journal:  Nat Genet       Date:  2006-07-30       Impact factor: 38.330

7.  An enhancer stimulates transcription in trans when attached to the promoter via a protein bridge.

Authors:  H P Müeller-Storm; J M Sogo; W Schaffner
Journal:  Cell       Date:  1989-08-25       Impact factor: 41.582

8.  An EDMD mutation in C. elegans lamin blocks muscle-specific gene relocation and compromises muscle integrity.

Authors:  Anna Mattout; Brietta L Pike; Benjamin D Towbin; Erin M Bank; Adriana Gonzalez-Sandoval; Michael B Stadler; Peter Meister; Yosef Gruenbaum; Susan M Gasser
Journal:  Curr Biol       Date:  2011-09-29       Impact factor: 10.834

9.  DNA looping facilitates targeting of a chromatin remodeling enzyme.

Authors:  Adam N Yadon; Badri Nath Singh; Michael Hampsey; Toshio Tsukiyama
Journal:  Mol Cell       Date:  2013-03-07       Impact factor: 17.970

10.  DNA looping induced by a transcriptional enhancer in vivo.

Authors:  Michael Petrascheck; Dominik Escher; Tokameh Mahmoudi; C Peter Verrijzer; Walter Schaffner; Alcide Barberis
Journal:  Nucleic Acids Res       Date:  2005-07-07       Impact factor: 16.971

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  12 in total

Review 1.  Biology and Mechanisms of Action of the Vitamin D Hormone.

Authors:  J Wesley Pike; Sylvia Christakos
Journal:  Endocrinol Metab Clin North Am       Date:  2017-09-29       Impact factor: 4.741

Review 2.  From Reductionism to Holism: Toward a More Complete View of Development Through Genome Engineering.

Authors:  Rebecca K Delker; Richard S Mann
Journal:  Adv Exp Med Biol       Date:  2017       Impact factor: 2.622

Review 3.  β-thalassemias: paradigmatic diseases for scientific discoveries and development of innovative therapies.

Authors:  Stefano Rivella
Journal:  Haematologica       Date:  2015-04       Impact factor: 9.941

Review 4.  Unraveling the 3D genome: genomics tools for multiscale exploration.

Authors:  Viviana I Risca; William J Greenleaf
Journal:  Trends Genet       Date:  2015-04-14       Impact factor: 11.639

5.  Systematic Evaluation of Statistical Methods for Identifying Looping Interactions in 5C Data.

Authors:  Thomas G Gilgenast; Jennifer E Phillips-Cremins
Journal:  Cell Syst       Date:  2019-03-20       Impact factor: 10.304

Review 6.  Recent advances and future perspectives in vector-omics.

Authors:  Austin Compton; Igor V Sharakhov; Zhijian Tu
Journal:  Curr Opin Insect Sci       Date:  2020-05-29       Impact factor: 5.186

Review 7.  Engineering three-dimensional genome folding.

Authors:  Di Zhang; Jessica Lam; Gerd A Blobel
Journal:  Nat Genet       Date:  2021-05-06       Impact factor: 38.330

Review 8.  Understanding Spatial Genome Organization: Methods and Insights.

Authors:  Vijay Ramani; Jay Shendure; Zhijun Duan
Journal:  Genomics Proteomics Bioinformatics       Date:  2016-02-11       Impact factor: 7.691

Review 9.  GIP Contributions to the Regulation of Centromere at the Interface Between the Nuclear Envelope and the Nucleoplasm.

Authors:  Marie-Edith Chabouté; Alexandre Berr
Journal:  Front Plant Sci       Date:  2016-02-08       Impact factor: 5.753

Review 10.  Functional organization and dynamics of the cell nucleus.

Authors:  Tongtong Guo; Yuda Fang
Journal:  Front Plant Sci       Date:  2014-08-12       Impact factor: 5.753

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