Literature DB >> 3479765

Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy.

S E Gerchman1, V Ramakrishnan.   

Abstract

Neutron scattering in solution and scanning transmission electron microscopy were simultaneously done on chicken erythrocyte chromatin at various salt and magnesium concentrations. We show that chromatin is organized into a higher-order structure even at low ionic strength and that the mass per unit length increases continuously as a function of salt concentration, reaching a limiting value of between six and seven nucleosomes per 11 nm. There is no evidence of a transition from a 10-nm to a 30-nm fiber. Fiber diameter is correlated with mass per unit length, showing that both increase during condensation. We also find that there is no essential difference between the mass per unit length measured by scanning transmission electron microscopy and neutron scattering in solution, showing that the ordered regions seen in micrographs are representative of chromatin in solution.

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Year:  1987        PMID: 3479765      PMCID: PMC299397          DOI: 10.1073/pnas.84.22.7802

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

Review 1.  Structure of the 30 nm chromatin fiber.

Authors:  G Felsenfeld; J D McGhee
Journal:  Cell       Date:  1986-02-14       Impact factor: 41.582

Review 2.  Mass mapping with the scanning transmission electron microscope.

Authors:  J S Wall; J F Hainfeld
Journal:  Annu Rev Biophys Biophys Chem       Date:  1986

3.  Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length.

Authors:  S P Williams; B D Athey; L J Muglia; R S Schappe; A H Gough; J P Langmore
Journal:  Biophys J       Date:  1986-01       Impact factor: 4.033

4.  The superstructure of chromatin and its condensation mechanism. I. Synchrotron radiation X-ray scattering results.

Authors:  J Bordas; L Perez-Grau; M H Koch; M C Vega; C Nave
Journal:  Eur Biophys J       Date:  1986       Impact factor: 1.733

5.  Orientation of nucleosomes and linker DNA in calf thymus chromatin determined by photochemical dichroism.

Authors:  S Mitra; D Sen; D M Crothers
Journal:  Nature       Date:  1984 Mar 15-21       Impact factor: 49.962

6.  The structure of chromatin reconstituted with phosphorylated H1. Circular dichroism and thermal denaturation studies.

Authors:  L J Kaplan; R Bauer; E Morrison; T A Langan; G D Fasman
Journal:  J Biol Chem       Date:  1984-07-25       Impact factor: 5.157

7.  Higher order structure of chromatin: orientation of nucleosomes within the 30 nm chromatin solenoid is independent of species and spacer length.

Authors:  J D McGhee; J M Nickol; G Felsenfeld; D C Rau
Journal:  Cell       Date:  1983-07       Impact factor: 41.582

8.  Structure of the 300A chromatin filament: X-ray diffraction from oriented samples.

Authors:  J Widom; A Klug
Journal:  Cell       Date:  1985-11       Impact factor: 41.582

9.  A defined structure of the 30 nm chromatin fibre which accommodates different nucleosomal repeat lengths.

Authors:  P J Butler
Journal:  EMBO J       Date:  1984-11       Impact factor: 11.598

10.  The higher-order structure of chromatin: evidence for a helical ribbon arrangement.

Authors:  C L Woodcock; L L Frado; J B Rattner
Journal:  J Cell Biol       Date:  1984-07       Impact factor: 10.539

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  57 in total

1.  DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure.

Authors:  D Z Staynov
Journal:  Nucleic Acids Res       Date:  2000-08-15       Impact factor: 16.971

2.  Computer simulation of the 30-nanometer chromatin fiber.

Authors:  Gero Wedemann; Jörg Langowski
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

3.  The connection between chromatin motion on the 100 nm length scale and core histone dynamics in live XTC-2 cells and isolated nuclei.

Authors:  Sara K Davis; Christopher J Bardeen
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

4.  Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei.

Authors:  Margot P Scheffer; Mikhail Eltsov; Achilleas S Frangakis
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

5.  Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams.

Authors:  René Stehr; Robert Schöpflin; Ramona Ettig; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

Review 6.  Structure determination of genomic domains by satisfaction of spatial restraints.

Authors:  Davide Baù; Marc A Marti-Renom
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

7.  Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes.

Authors:  Sergei A Grigoryev; Gavin Bascom; Jenna M Buckwalter; Michael B Schubert; Christopher L Woodcock; Tamar Schlick
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

8.  Compaction kinetics on single DNAs: purified nucleosome reconstitution systems versus crude extract.

Authors:  Gaudeline Wagner; Aurélien Bancaud; Jean-Pierre Quivy; Cédric Clapier; Geneviève Almouzni; Jean-Louis Viovy
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

9.  EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.

Authors:  Philip J J Robinson; Louise Fairall; Van A T Huynh; Daniela Rhodes
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-14       Impact factor: 11.205

10.  A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments.

Authors:  Gaurav Arya; Tamar Schlick
Journal:  J Phys Chem A       Date:  2009-04-23       Impact factor: 2.781

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