Literature DB >> 8138565

Chromatin fibers observed in situ in frozen hydrated sections. Native fiber diameter is not correlated with nucleosome repeat length.

C L Woodcock1.   

Abstract

Chromatin fibers have been observed and measured in frozen hydrated sections of three types of cell (chicken erythrocytes and sperm of Patiria miniata and Thyone briareus) representing an approximately 20-bp range of nucleosomal repeat lengths. For sperm of the starfish P. miniata, it was possible to obtain images of chromatin fibers from cells that were swimming in seawater up to the moment of cryo-immobilization, thus providing a record of the native morphology of the chromatin of these cells. Glutaraldehyde fixation produced no significant changes in the ultrastructure or diameter of chromatin fibers, and fiber diameters observed in cryosections were similar to those recorded after low temperature embedding in Lowicryl K11M. Chromatin fiber diameters measured from cryosections of the three types of nuclei were similar, a striking contrast to the situation for chromatin isolated from these cell types, where a strong positive correlation between diameter and nucleosomal repeat length has been established. The demonstration of chromatin fibers in unfixed whole cells establishes an unequivocal baseline for the study of native chromatin and chromosome architecture. The significant differences between chromatin fibers in nucleo and after isolation supports a previous observation (P. J. Giannasca, R. A. Horowitz, and C. L. Woodcock. 1993. J. Cell Sci. 105:551-561), and suggests that structural studies on isolated material should be interpreted with caution until the changes that accompany chromatin isolation are understood.

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Year:  1994        PMID: 8138565      PMCID: PMC2120018          DOI: 10.1083/jcb.125.1.11

Source DB:  PubMed          Journal:  J Cell Biol        ISSN: 0021-9525            Impact factor:   10.539


  25 in total

Review 1.  Cryo-electron microscopy of vitrified specimens.

Authors:  J Dubochet; M Adrian; J J Chang; J C Homo; J Lepault; A W McDowall; P Schultz
Journal:  Q Rev Biophys       Date:  1988-05       Impact factor: 5.318

2.  Ultrastructural preservation of nuclei and chromatin: improvement with low-temperature methods.

Authors:  R A Horowitz; P J Giannasca; C L Woodcock
Journal:  J Microsc       Date:  1990-02       Impact factor: 1.758

Review 3.  Transmission electron microscopy of frozen hydrated biological material.

Authors:  M Stewart
Journal:  Electron Microsc Rev       Date:  1989

4.  Electron microscopy of frozen hydrated eukaryotic flagella.

Authors:  J M Murray
Journal:  J Ultrastruct Mol Struct Res       Date:  1986 Apr-Jun

5.  Seasonal changes in testicular structure and localization of a sperm surface glycoprotein during spermatogenesis in sea urchins.

Authors:  R D Ward; D Nishioka
Journal:  J Histochem Cytochem       Date:  1993-03       Impact factor: 2.479

6.  A chromatin folding model that incorporates linker variability generates fibers resembling the native structures.

Authors:  C L Woodcock; S A Grigoryev; R A Horowitz; N Whitaker
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-01       Impact factor: 11.205

7.  Alternative staining methods for Lowicryl sections.

Authors:  R A Horowitz; C L Woodcock
Journal:  J Histochem Cytochem       Date:  1992-01       Impact factor: 2.479

8.  The diameters of frozen-hydrated chromatin fibers increase with DNA linker length: evidence in support of variable diameter models for chromatin.

Authors:  B D Athey; M F Smith; D A Rankert; S P Williams; J P Langmore
Journal:  J Cell Biol       Date:  1990-09       Impact factor: 10.539

9.  The three-dimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon.

Authors:  R A Horowitz; D A Agard; J W Sedat; C L Woodcock
Journal:  J Cell Biol       Date:  1994-04       Impact factor: 10.539

10.  Transitions between in situ and isolated chromatin.

Authors:  P J Giannasca; R A Horowitz; C L Woodcock
Journal:  J Cell Sci       Date:  1993-06       Impact factor: 5.285

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  38 in total

1.  Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei.

Authors:  Margot P Scheffer; Mikhail Eltsov; Achilleas S Frangakis
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

Review 2.  Coming to terms with chromatin structure.

Authors:  Liron Even-Faitelson; Vahideh Hassan-Zadeh; Zahra Baghestani; David P Bazett-Jones
Journal:  Chromosoma       Date:  2015-07-30       Impact factor: 4.316

3.  Cryoelectron microscopy of vitrified sections: a new challenge for the analysis of functional nuclear architecture.

Authors:  C Bouchet-Marquis; J Dubochet; S Fakan
Journal:  Histochem Cell Biol       Date:  2005-12-13       Impact factor: 4.304

Review 4.  Organization of interphase chromatin.

Authors:  Rachel A Horowitz-Scherer; Christopher L Woodcock
Journal:  Chromosoma       Date:  2005-12-17       Impact factor: 4.316

5.  EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.

Authors:  Philip J J Robinson; Louise Fairall; Van A T Huynh; Daniela Rhodes
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-14       Impact factor: 11.205

6.  Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ.

Authors:  Mikhail Eltsov; Kirsty M Maclellan; Kazuhiro Maeshima; Achilleas S Frangakis; Jacques Dubochet
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

7.  High order DNA structure as inferred by optical fluorimetry and scanning calorimetry.

Authors:  C Nicolini; S Carrara; G Mascetti
Journal:  Mol Biol Rep       Date:  1997-11       Impact factor: 2.316

8.  Liquid crystalline ordering of nucleosome core particles under macromolecular crowding conditions: evidence for a discotic columnar hexagonal phase.

Authors:  A Leforestier; F Livolant
Journal:  Biophys J       Date:  1997-10       Impact factor: 4.033

9.  Changing chromatin fiber conformation by nucleosome repositioning.

Authors:  Oliver Müller; Nick Kepper; Robert Schöpflin; Ramona Ettig; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2014-11-04       Impact factor: 4.033

10.  Open and closed domains in the mouse genome are configured as 10-nm chromatin fibres.

Authors:  Eden Fussner; Mike Strauss; Ugljesa Djuric; Ren Li; Kashif Ahmed; Michael Hart; James Ellis; David P Bazett-Jones
Journal:  EMBO Rep       Date:  2012-11-06       Impact factor: 8.807

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