Literature DB >> 23231286

A GPU tool for efficient, accurate, and realistic simulation of cone beam CT projections.

Xun Jia1, Hao Yan, Laura Cervino, Michael Folkerts, Steve B Jiang.   

Abstract

PURPOSE: Simulation of x-ray projection images plays an important role in cone beam CT (CBCT) related research projects, such as the design of reconstruction algorithms or scanners. A projection image contains primary signal, scatter signal, and noise. It is computationally demanding to perform accurate and realistic computations for all of these components. In this work, the authors develop a package on graphics processing unit (GPU), called gDRR, for the accurate and efficient computations of x-ray projection images in CBCT under clinically realistic conditions.
METHODS: The primary signal is computed by a trilinear ray-tracing algorithm. A Monte Carlo (MC) simulation is then performed, yielding the primary signal and the scatter signal, both with noise. A denoising process specifically designed for Poisson noise removal is applied to obtain a smooth scatter signal. The noise component is then obtained by combining the difference between the MC primary and the ray-tracing primary signals, and the difference between the MC simulated scatter and the denoised scatter signals. Finally, a calibration step converts the calculated noise signal into a realistic one by scaling its amplitude according to a specified mAs level. The computations of gDRR include a number of realistic features, e.g., a bowtie filter, a polyenergetic spectrum, and detector response. The implementation is fine-tuned for a GPU platform to yield high computational efficiency.
RESULTS: For a typical CBCT projection with a polyenergetic spectrum, the calculation time for the primary signal using the ray-tracing algorithms is 1.2-2.3 s, while the MC simulations take 28.1-95.3 s, depending on the voxel size. Computation time for all other steps is negligible. The ray-tracing primary signal matches well with the primary part of the MC simulation result. The MC simulated scatter signal using gDRR is in agreement with EGSnrc results with a relative difference of 3.8%. A noise calibration process is conducted to calibrate gDRR against a real CBCT scanner. The calculated projections are accurate and realistic, such that beam-hardening artifacts and scatter artifacts can be reproduced using the simulated projections. The noise amplitudes in the CBCT images reconstructed from the simulated projections also agree with those in the measured images at corresponding mAs levels.
CONCLUSIONS: A GPU computational tool, gDRR, has been developed for the accurate and efficient simulations of x-ray projections of CBCT with realistic configurations.

Mesh:

Year:  2012        PMID: 23231286      PMCID: PMC3523889          DOI: 10.1118/1.4766436

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  27 in total

1.  Accurate condensed history Monte Carlo simulation of electron transport. I. EGSnrc, the new EGS4 version.

Authors:  I Kawrakow
Journal:  Med Phys       Date:  2000-03       Impact factor: 4.071

2.  Flat-panel cone-beam computed tomography for image-guided radiation therapy.

Authors:  David A Jaffray; Jeffrey H Siewerdsen; John W Wong; Alvaro A Martinez
Journal:  Int J Radiat Oncol Biol Phys       Date:  2002-08-01       Impact factor: 7.038

3.  An efficient Monte Carlo-based algorithm for scatter correction in keV cone-beam CT.

Authors:  G Poludniowski; P M Evans; V N Hansen; S Webb
Journal:  Phys Med Biol       Date:  2009-06-02       Impact factor: 3.609

4.  An experimental study on the noise properties of x-ray CT sinogram data in Radon space.

Authors:  Jing Wang; Hongbing Lu; Zhengrong Liang; Daria Eremina; Guangxiang Zhang; Su Wang; John Chen; James Manzione
Journal:  Phys Med Biol       Date:  2008-06-03       Impact factor: 3.609

5.  High performance computing for deformable image registration: towards a new paradigm in adaptive radiotherapy.

Authors:  Sanjiv S Samant; Junyi Xia; Pinar Muyan-Ozcelik; John D Owens
Journal:  Med Phys       Date:  2008-08       Impact factor: 4.071

6.  Scatter correction for cone-beam CT in radiation therapy.

Authors:  Lei Zhu; Yaoqin Xie; Jing Wang; Lei Xing
Journal:  Med Phys       Date:  2009-06       Impact factor: 4.071

7.  Fast convolution-superposition dose calculation on graphics hardware.

Authors:  Sami Hissoiny; Benoît Ozell; Philippe Després
Journal:  Med Phys       Date:  2009-06       Impact factor: 4.071

8.  An accurate method for computer-generating tungsten anode x-ray spectra from 30 to 140 kV.

Authors:  J M Boone; J A Seibert
Journal:  Med Phys       Date:  1997-11       Impact factor: 4.071

9.  Fast calculation of the exact radiological path for a three-dimensional CT array.

Authors:  R L Siddon
Journal:  Med Phys       Date:  1985 Mar-Apr       Impact factor: 4.071

10.  Fast Monte Carlo simulation for patient-specific CT/CBCT imaging dose calculation.

Authors:  Xun Jia; Hao Yan; Xuejun Gu; Steve B Jiang
Journal:  Phys Med Biol       Date:  2012-01-06       Impact factor: 3.609

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  37 in total

1.  Progressive cone beam CT dose control in image-guided radiation therapy.

Authors:  Hao Yan; Xin Zhen; Laura Cerviño; Steve B Jiang; Xun Jia
Journal:  Med Phys       Date:  2013-06       Impact factor: 4.071

2.  DukeSim: A Realistic, Rapid, and Scanner-Specific Simulation Framework in Computed Tomography.

Authors:  Ehsan Abadi; Brian Harrawood; Shobhit Sharma; Anuj Kapadia; William P Segars; Ehsan Samei
Journal:  IEEE Trans Med Imaging       Date:  2018-12-12       Impact factor: 10.048

3.  A hybrid reconstruction algorithm for fast and accurate 4D cone-beam CT imaging.

Authors:  Hao Yan; Xin Zhen; Michael Folkerts; Yongbao Li; Tinsu Pan; Laura Cervino; Steve B Jiang; Xun Jia
Journal:  Med Phys       Date:  2014-07       Impact factor: 4.071

4.  A method for volumetric imaging in radiotherapy using single x-ray projection.

Authors:  Yuan Xu; Hao Yan; Luo Ouyang; Jing Wang; Linghong Zhou; Laura Cervino; Steve B Jiang; Xun Jia
Journal:  Med Phys       Date:  2015-05       Impact factor: 4.071

5.  Towards the clinical implementation of iterative low-dose cone-beam CT reconstruction in image-guided radiation therapy: cone/ring artifact correction and multiple GPU implementation.

Authors:  Hao Yan; Xiaoyu Wang; Feng Shi; Ti Bai; Michael Folkerts; Laura Cervino; Steve B Jiang; Xun Jia
Journal:  Med Phys       Date:  2014-11       Impact factor: 4.071

6.  Estimating scatter from sparsely measured primary signal.

Authors:  Gongting Wu; Christina R Inscoe; Jabari Calliste; Jing Shan; Yueh Z Lee; Otto Zhou; Jianping Lu
Journal:  J Med Imaging (Bellingham)       Date:  2017-03-29

7.  Relationship between x-ray illumination field size and flat field intensity and its impacts on x-ray imaging.

Authors:  Xue Dong; Tianye Niu; Xun Jia; Lei Zhu
Journal:  Med Phys       Date:  2012-10       Impact factor: 4.071

8.  A model-based scatter artifacts correction for cone beam CT.

Authors:  Wei Zhao; Don Vernekohl; Jun Zhu; Luyao Wang; Lei Xing
Journal:  Med Phys       Date:  2016-04       Impact factor: 4.071

9.  Optimization of the geometry and speed of a moving blocker system for cone-beam computed tomography scatter correction.

Authors:  Xi Chen; Luo Ouyang; Hao Yan; Xun Jia; Bin Li; Qingwen Lyu; You Zhang; Jing Wang
Journal:  Med Phys       Date:  2017-09       Impact factor: 4.071

10.  CT to cone-beam CT deformable registration with simultaneous intensity correction.

Authors:  Xin Zhen; Xuejun Gu; Hao Yan; Linghong Zhou; Xun Jia; Steve B Jiang
Journal:  Phys Med Biol       Date:  2012-10-03       Impact factor: 3.609

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