Literature DB >> 23224836

A theoretical investigation of the characteristics of hydrogen/halogen bonding interactions in dibromo-nitroaniline.

Mehdi D Esrafili1.   

Abstract

In this work, computations of density functional theory (DFT) were carried out to investigate the nature of interactions in solid 2,6-dibromo-4-nitroaniline (DBNA). This system was selected to mimic the hydrogen/halogen bonding found within crystal structures as well as within biological molecules. DFT (M06-2X/6-311++G**) calculations indicated that the binding energies for different of interactions lie in the range between -1.66 and -9.77 kcal mol(-1). The quantum theory of atoms in molecules (QTAIM) was applied to provide more insight into the nature of these interactions. Symmetry-adapted perturbation theory (SAPT) analysis indicated that stability of the Br···Br halogen bonds is predicted to be attributable mainly to dispersion, while electrostatic forces, which have been widely believed to be responsible for these types of interactions, play a smaller role. Our results indicate that, for those nuclei participating in hydrogen/halogen bonding interactions, nuclear quadrupole resonance parameters exhibit considerable changes on going from the isolated molecule model to crystalline DBNA.

Entities:  

Year:  2012        PMID: 23224836     DOI: 10.1007/s00894-012-1691-x

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  33 in total

1.  Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies.

Authors:  Felipe A Bulat; Alejandro Toro-Labbé; Tore Brinck; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2010-04-02       Impact factor: 1.810

2.  Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions.

Authors:  Yan Zhao; Nathan E Schultz; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2006-03       Impact factor: 6.006

3.  QTAIM study of strong H-bonds with the O-H...a fragment (A=O, N) in three-dimensional periodical crystals.

Authors:  M V Vener; A V Manaev; A N Egorova; V G Tsirelson
Journal:  J Phys Chem A       Date:  2007-01-25       Impact factor: 2.781

4.  The nature of halogen...halogen synthons: crystallographic and theoretical studies.

Authors:  Firas F Awwadi; Roger D Willett; Kirk A Peterson; Brendan Twamley
Journal:  Chemistry       Date:  2006-12-04       Impact factor: 5.236

5.  Sigma-hole bonding between like atoms; a fallacy of atomic charges.

Authors:  Peter Politzer; Jane S Murray; Monica C Concha
Journal:  J Mol Model       Date:  2008-03-04       Impact factor: 1.810

6.  Investigation of H-bonding and halogen-bonding effects in dichloroacetic acid: DFT calculations of NQR parameters and QTAIM analysis.

Authors:  Mehdi D Esrafili
Journal:  J Mol Model       Date:  2012-06-27       Impact factor: 1.810

7.  Halogen bonding: the sigma-hole. Proceedings of "Modeling interactions in biomolecules II", Prague, September 5th-9th, 2005.

Authors:  Timothy Clark; Matthias Hennemann; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2006-08-23       Impact factor: 1.810

8.  Halogen bonds in biological molecules.

Authors:  Pascal Auffinger; Franklin A Hays; Eric Westhof; P Shing Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

9.  Theoretical study of properties of H bonds and intermolecular interactions in linear cis-,trans-cyclotriazane clusters (n = 2-8).

Authors:  Hua-Jie Song; He-Ming Xiao; Hai-Shan Dong
Journal:  J Chem Phys       Date:  2006-02-21       Impact factor: 3.488

10.  Br···O Complexes as Probes of Factors Affecting Halogen Bonding: Interactions of Bromobenzenes and Bromopyrimidines with Acetone.

Authors:  Kevin E Riley; Jane S Murray; Peter Politzer; Monica C Concha; Pavel Hobza
Journal:  J Chem Theory Comput       Date:  2008-12-18       Impact factor: 6.006

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  12 in total

1.  A quantum mechanics-based halogen bonding scoring function for protein-ligand interactions.

Authors:  Zhuo Yang; Yingtao Liu; Zhaoqiang Chen; Zhijian Xu; Jiye Shi; Kaixian Chen; Weiliang Zhu
Journal:  J Mol Model       Date:  2015-05-10       Impact factor: 1.810

2.  CNXeCl and CNXeBr species as halogen bond donors: a quantum chemical study on the structure, properties, and nature of halogen···nitrogen interactions.

Authors:  Mehdi D Esrafili; Parisa Juyban
Journal:  J Mol Model       Date:  2014-03-29       Impact factor: 1.810

3.  Revealing substitution effects on the strength and nature of halogen-hydride interactions: a theoretical study.

Authors:  Mehdi D Esrafili; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2013-06-23       Impact factor: 1.810

4.  Cooperativity between fluorine-centered halogen bonds: investigation of substituent effects.

Authors:  Mehdi D Esrafili; Mehdi D Esraili; Fariba Mohammadian-Sabet; Parvin Esmailpour; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2013-10-27       Impact factor: 1.810

5.  Halogen bonds enhanced by σ-hole and π-hole interactions: a comparative study on cooperativity and competition effects between X∙∙∙N and S∙∙∙N interactions in H3N∙∙∙XCN∙∙∙SF2 and H 3N∙∙∙XCN∙∙∙SO2 complexes (X   = F, Cl, Br and I).

Authors:  Mehdi D Esrafili; Mahshad Vakili
Journal:  J Mol Model       Date:  2014-05-27       Impact factor: 1.810

6.  An ab initio study on the concerted interaction between chalcogen and pnicogen bonds.

Authors:  Bahman Mohammadian Asiabar; Mehdi D Esrafili; Fariba Mohammadian-Sabet; Hamid Reza Sobhi; Majid Javaheri
Journal:  J Mol Model       Date:  2014-12-11       Impact factor: 1.810

7.  Does single-electron chalcogen bond exist? Some theoretical insights.

Authors:  Mehdi D Esrafili; Fariba Mohammadian-Sabet
Journal:  J Mol Model       Date:  2015-03-03       Impact factor: 1.810

8.  Theoretical study on cooperative effects between X⋯N and X⋯Carbene halogen bonds (X = F,Cl,Br and I).

Authors:  Mehdi D Esrafili; Fariba Mohammdain-Sabet; Parvin Esmailpour
Journal:  J Mol Model       Date:  2013-09-08       Impact factor: 1.810

9.  Exploring surface reactivity of phosphorous-doped (6,0) and (4,4) BC3 nanotubes: a DFT study.

Authors:  Mohammad Alizadeh; Mehdi D Esrafili; Esmail Vessally
Journal:  J Mol Model       Date:  2013-09-17       Impact factor: 1.810

10.  Insights into the strength and nature of carbene···halogen bond interactions: a theoretical perspective.

Authors:  Mehdi D Esrafili; Nafiseh Mohammadirad
Journal:  J Mol Model       Date:  2013-03-02       Impact factor: 1.810

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