Literature DB >> 23192292

Biosynthetically directed ²H labelling for stereospecific resonance assignments of glycine methylene groups.

Karin V Loscha1, Gottfried Otting.   

Abstract

Stereospecific resonance assignments of the α-protons of glycine are often difficult to obtain by measurements of scalar coupling constants or nuclear Overhauser effects. Here we show that these stereospecific resonance assignments can readily be obtained by cell-free protein synthesis in D(2)O, as the serine hydroxymethyltransferase, that is naturally present in E. coli cell extracts, selectively replaces the pro-2S proton of glycine by a deuterium. To encourage the conversion by serine hydroxymethyltransferase, we performed the cell-free reaction without the addition of any glycine, exploiting the capability of the enzyme to convert serine to glycine with the help of tetrahydrofolate. (13)C-HSQC spectra of ubiquitin produced with (13)C/(15)N-serine showed that about a quarter of the glycine residues derived from serine were stereospecifically deuterated. Pulse sequences are presented that select the signals from the stereospecifically deuterated glycine residues.

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Year:  2012        PMID: 23192292     DOI: 10.1007/s10858-012-9690-x

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  34 in total

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Authors:  Eugene Hayato Morita; Masato Shimizu; Tomio Ogasawara; Yaeta Endo; Rikou Tanaka; Toshiyuki Kohno
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

Review 2.  SAIL--stereo-array isotope labeling.

Authors:  Masatsune Kainosho; Peter Güntert
Journal:  Q Rev Biophys       Date:  2010-04-07       Impact factor: 5.318

3.  Accurate determination of leucine and valine side-chain conformations using U-[15N/13C/2H]/[1H-(methine/methyl)-Leu/Val] isotope labeling, NOE pattern recognition, and methine Cgamma-Hgamma/Cbeta-Hbeta residual dipolar couplings: application to the 34-kDa enzyme IIA(chitobiose).

Authors:  Chun Tang; Junji Iwahara; G Marius Clore
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

4.  A comparative study of the kinetics and stereochemistry of the serine hydroxymethyltransferase- and tryptophan synthase-catalysed exchange of the pro-2R and pro-2S protons of glycine.

Authors:  J P Malthouse; J J Milne; L S Gariani
Journal:  Biochem J       Date:  1991-03-15       Impact factor: 3.857

5.  Stereospecific assignments of glycine in proteins by stereospecific deuteration and 15N labeling.

Authors:  R W Curley; M J Panigot; A P Hansen; S W Fesik
Journal:  J Biomol NMR       Date:  1994-05       Impact factor: 2.835

6.  Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy.

Authors:  J L Markley; A Bax; Y Arata; C W Hilbers; R Kaptein; B D Sykes; P E Wright; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-07       Impact factor: 2.835

7.  Floating stereospecific assignment revisited: application to an 18 kDa protein and comparison with J-coupling data.

Authors:  R H Folmer; C W Hilbers; R N Konings; M Nilges
Journal:  J Biomol NMR       Date:  1997-04       Impact factor: 2.835

8.  An economical method for producing stable-isotope labeled proteins by the E. coli cell-free system.

Authors:  Jun Yokoyama; Takayoshi Matsuda; Seizo Koshiba; Takanori Kigawa
Journal:  J Biomol NMR       Date:  2010-11-04       Impact factor: 2.835

9.  Glutarate and N-acetyl-L-glutamate buffers for cell-free synthesis of selectively 15N-labelled proteins.

Authors:  Xinying Jia; Kiyoshi Ozawa; Karin Loscha; Gottfried Otting
Journal:  J Biomol NMR       Date:  2009-04-28       Impact factor: 2.835

10.  Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling.

Authors:  D Neri; T Szyperski; G Otting; H Senn; K Wüthrich
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

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  2 in total

1.  Selective (15)N-labeling of the side-chain amide groups of asparagine and glutamine for applications in paramagnetic NMR spectroscopy.

Authors:  Chan Cao; Jia-Liang Chen; Yin Yang; Feng Huang; Gottfried Otting; Xun-Cheng Su
Journal:  J Biomol NMR       Date:  2014-07-08       Impact factor: 2.835

Review 2.  Advances in NMR structures of integral membrane proteins.

Authors:  Innokentiy Maslennikov; Senyon Choe
Journal:  Curr Opin Struct Biol       Date:  2013-05-27       Impact factor: 6.809

  2 in total

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