Literature DB >> 23184059

Transcriptional activation of transposable elements in mouse zygotes is independent of Tet3-mediated 5-methylcytosine oxidation.

Azusa Inoue1, Shogo Matoba, Yi Zhang.   

Abstract

The methylation state of the paternal genome is rapidly reprogrammed shortly after fertilization. Recent studies have revealed that loss of 5-methylcytosine (5mC) in zygotes correlates with appearance of 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC). This process is mediated by Tet3 and the 5mC oxidation products generated in zygotes are gradually lost during preimplantation development through a replication-dependent dilution process. Despite these findings, the biological significance of Tet3-mediated oxidation of 5mC to 5hmC/5fC/5caC in zygotes is unknown. DNA methylation plays an important role in silencing gene expression including the repression of transposable elements (TEs). Given that the activation of TEs during preimplantation development correlates with loss of DNA methylation, it is believed that paternal DNA demethylation may have an important role in TE activation. Here we examined this hypothesis and found that Tet3-mediated 5mC oxidation does not have a significant contribution to TE activation. We show that the expression of LINE-1 (long interspersed nucleotide element 1) and ERVL (endogenous retroviruses class III) are activated from both paternal and maternal genomes in zygotes. Inhibition of 5mC oxidation by siRNA-mediated depletion of Tet3 affected neither TE activation, nor global transcription in zygotes. Thus, our study provides the first evidence demonstrating that activation of both TEs and global transcription in zygotes are independent of Tet3-mediated 5mC oxidation.

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Year:  2012        PMID: 23184059      PMCID: PMC3515759          DOI: 10.1038/cr.2012.160

Source DB:  PubMed          Journal:  Cell Res        ISSN: 1001-0602            Impact factor:   25.617


  45 in total

1.  Demethylation of the zygotic paternal genome.

Authors:  W Mayer; A Niveleau; J Walter; R Fundele; T Haaf
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

2.  Dynamics of global gene expression changes during mouse preimplantation development.

Authors:  Toshio Hamatani; Mark G Carter; Alexei A Sharov; Minoru S H Ko
Journal:  Dev Cell       Date:  2004-01       Impact factor: 12.270

3.  Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse.

Authors:  Natasha Lane; Wendy Dean; Sylvia Erhardt; Petra Hajkova; Azim Surani; Jörn Walter; Wolf Reik
Journal:  Genesis       Date:  2003-02       Impact factor: 2.487

4.  MuERV-L is one of the earliest transcribed genes in mouse one-cell embryos.

Authors:  Daisuke Kigami; Naojiro Minami; Hanae Takayama; Hiroshi Imai
Journal:  Biol Reprod       Date:  2003-02       Impact factor: 4.285

5.  Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos.

Authors:  Anne E Peaston; Alexei V Evsikov; Joel H Graber; Wilhelmine N de Vries; Andrea E Holbrook; Davor Solter; Barbara B Knowles
Journal:  Dev Cell       Date:  2004-10       Impact factor: 12.270

6.  Analysis of active chromatin modifications in early mammalian embryos reveals uncoupling of H2A.Z acetylation and H3K36 trimethylation from embryonic genome activation.

Authors:  Ana Bošković; Ambre Bender; Laurence Gall; Céline Ziegler-Birling; Nathalie Beaujean; Maria-Elena Torres-Padilla
Journal:  Epigenetics       Date:  2012-07-01       Impact factor: 4.528

7.  Endogenous transcription occurs at the 1-cell stage in the mouse embryo.

Authors:  C Bouniol; E Nguyen; P Debey
Journal:  Exp Cell Res       Date:  1995-05       Impact factor: 3.905

8.  Lsh, an epigenetic guardian of repetitive elements.

Authors:  Jiaqiang Huang; Tao Fan; Qingsheng Yan; Heming Zhu; Stephen Fox; Haleem J Issaq; Lionel Best; Lisa Gangi; David Munroe; Kathrin Muegge
Journal:  Nucleic Acids Res       Date:  2004-09-24       Impact factor: 16.971

9.  Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L.

Authors:  Déborah Bourc'his; Timothy H Bestor
Journal:  Nature       Date:  2004-08-18       Impact factor: 49.962

10.  Undermethylation of specific LINE-1 sequences in human cells producing a LINE-1-encoded protein.

Authors:  R E Thayer; M F Singer; T G Fanning
Journal:  Gene       Date:  1993-11-15       Impact factor: 3.688

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  24 in total

1.  Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly.

Authors:  Takashi Ishiuchi; Rocio Enriquez-Gasca; Eiji Mizutani; Ana Bošković; Celine Ziegler-Birling; Diego Rodriguez-Terrones; Teruhiko Wakayama; Juan M Vaquerizas; Maria-Elena Torres-Padilla
Journal:  Nat Struct Mol Biol       Date:  2015-08-03       Impact factor: 15.369

Review 2.  LINEs in mice: features, families, and potential roles in early development.

Authors:  Joanna W Jachowicz; Maria-Elena Torres-Padilla
Journal:  Chromosoma       Date:  2015-05-16       Impact factor: 4.316

3.  Delineation of a Human Mendelian Disorder of the DNA Demethylation Machinery: TET3 Deficiency.

Authors:  David B Beck; Ana Petracovici; Chongsheng He; Hannah W Moore; Raymond J Louie; Muhammad Ansar; Sofia Douzgou; Sivagamy Sithambaram; Trudie Cottrell; Regie Lyn P Santos-Cortez; Eloise J Prijoles; Renee Bend; Boris Keren; Cyril Mignot; Marie-Christine Nougues; Katrin Õunap; Tiia Reimand; Sander Pajusalu; Muhammad Zahid; Muhammad Arif Nadeem Saqib; Julien Buratti; Eleanor G Seaby; Kirsty McWalter; Aida Telegrafi; Dustin Baldridge; Marwan Shinawi; Suzanne M Leal; G Bradley Schaefer; Roger E Stevenson; Siddharth Banka; Roberto Bonasio; Jill A Fahrner
Journal:  Am J Hum Genet       Date:  2020-01-09       Impact factor: 11.025

Review 4.  The roles of TET family proteins in development and stem cells.

Authors:  Jihong Yang; Nazym Bashkenova; Ruge Zang; Xin Huang; Jianlong Wang
Journal:  Development       Date:  2020-01-15       Impact factor: 6.868

Review 5.  Epigenetic regulation of mouse preimplantation embryo development.

Authors:  Xudong Fu; Chunxia Zhang; Yi Zhang
Journal:  Curr Opin Genet Dev       Date:  2020-06-18       Impact factor: 5.578

Review 6.  The presence, role and clinical use of spermatozoal RNAs.

Authors:  Meritxell Jodar; Sellappan Selvaraju; Edward Sendler; Michael P Diamond; Stephen A Krawetz
Journal:  Hum Reprod Update       Date:  2013-07-14       Impact factor: 15.610

Review 7.  TET-mediated active DNA demethylation: mechanism, function and beyond.

Authors:  Xiaoji Wu; Yi Zhang
Journal:  Nat Rev Genet       Date:  2017-05-30       Impact factor: 53.242

8.  Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis.

Authors:  Jinsuk Kang; Matthias Lienhard; William A Pastor; Ashu Chawla; Mark Novotny; Ageliki Tsagaratou; Roger S Lasken; Elizabeth C Thompson; M Azim Surani; Sergei B Koralov; Sundeep Kalantry; Lukas Chavez; Anjana Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-21       Impact factor: 11.205

Review 9.  TETonic shift: biological roles of TET proteins in DNA demethylation and transcription.

Authors:  William A Pastor; L Aravind; Anjana Rao
Journal:  Nat Rev Mol Cell Biol       Date:  2013-06       Impact factor: 94.444

10.  Tet3 and DNA replication mediate demethylation of both the maternal and paternal genomes in mouse zygotes.

Authors:  Li Shen; Azusa Inoue; Jin He; Yuting Liu; Falong Lu; Yi Zhang
Journal:  Cell Stem Cell       Date:  2014-10-02       Impact factor: 24.633

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