Literature DB >> 28699757

Solvent-Driven Dynamical Crossover in the Phenylalanine Side-Chain from the Hydrophobic Core of Amyloid Fibrils Detected by 2H NMR Relaxation.

Liliya Vugmeyster1, Dmitry Ostrovsky2, Gina L Hoatson3, Wei Qiang4, Isaac B Falconer1.   

Abstract

Aromatic residues are important markers of dynamical changes in proteins' hydrophobic cores. In this work we investigated the dynamics of the F19 side-chain in the core of amyloid fibrils across a wide temperature range of 300 to 140 K. We utilized solid-state 2H NMR relaxation to demonstrate the presence of a solvent-driven dynamical crossover between different motional regimes, often also referred to as the dynamical transition. In particular, the dynamics are dominated by small-angle fluctuations at low temperatures and by π-flips of the aromatic ring at high temperatures. The crossover temperature is more than 43 degrees lower for the hydrated state of the fibrils compared to the dry state, indicating that interactions with water facilitate π-flips. Further, crossover temperatures are shown to be very sensitive to polymorphic states of the fibrils, such as the 2-fold and 3-fold symmetric morphologies of the wild-type protein as well as D23N mutant protofibrils. We speculate that these differences can be attributed, at least partially, to enhanced interactions with water in the 3-fold polymorph, which has been shown to have a water-accessible cavity. Combined with previous studies of methyl group dynamics, the results highlight the presence of multiple dynamics modes in the core of the fibrils, which was originally believed to be quite rigid.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28699757      PMCID: PMC5567839          DOI: 10.1021/acs.jpcb.7b04726

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  46 in total

1.  Solvent mobility and the protein 'glass' transition.

Authors:  D Vitkup; D Ringe; G A Petsko; M Karplus
Journal:  Nat Struct Biol       Date:  2000-01

2.  Microscopic origins of entropy, heat capacity and the glass transition in proteins.

Authors:  A L Lee; A J Wand
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

3.  A thermometer for nonspinning solid-state NMR spectroscopy

Authors: 
Journal:  J Magn Reson       Date:  2000-10       Impact factor: 2.229

4.  Crystalline ribonuclease A loses function below the dynamical transition at 220 K.

Authors:  B F Rasmussen; A M Stock; D Ringe; G A Petsko
Journal:  Nature       Date:  1992-06-04       Impact factor: 49.962

5.  Biomolecular cryocrystallography: structural changes during flash-cooling.

Authors:  Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-29       Impact factor: 11.205

Review 6.  The 'glass transition' in protein dynamics: what it is, why it occurs, and how to exploit it.

Authors:  Dagmar Ringe; Gregory A Petsko
Journal:  Biophys Chem       Date:  2003-09       Impact factor: 2.352

7.  Novel amyloid precursor protein mutation in an Iowa family with dementia and severe cerebral amyloid angiopathy.

Authors:  T J Grabowski; H S Cho; J P Vonsattel; G W Rebeck; S M Greenberg
Journal:  Ann Neurol       Date:  2001-06       Impact factor: 10.422

8.  Self-propagating, molecular-level polymorphism in Alzheimer's beta-amyloid fibrils.

Authors:  Aneta T Petkova; Richard D Leapman; Zhihong Guo; Wai-Ming Yau; Mark P Mattson; Robert Tycko
Journal:  Science       Date:  2005-01-14       Impact factor: 47.728

9.  Infrequent cavity-forming fluctuations in HPr from Staphylococcus carnosus revealed by pressure- and temperature-dependent tyrosine ring flips.

Authors:  Mineyuki Hattori; Hua Li; Hiroaki Yamada; Kazuyuki Akasaka; Wolfgang Hengstenberg; Wolfram Gronwald; Hans Robert Kalbitzer
Journal:  Protein Sci       Date:  2004-12       Impact factor: 6.725

10.  Phenylene ring dynamics in bisphenol-A-polysulfone by neutron scattering.

Authors:  S Arrese-Igor; A Arbe; A Alegría; J Colmenero; B Frick
Journal:  J Chem Phys       Date:  2004-01-01       Impact factor: 3.488

View more
  8 in total

Review 1.  Basic experiments in 2H static NMR for the characterization of protein side-chain dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Methods       Date:  2018-04-27       Impact factor: 3.608

2.  Solid-state NMR reveals a comprehensive view of the dynamics of the flexible, disordered N-terminal domain of amyloid-β fibrils.

Authors:  Dan Fai Au; Dmitry Ostrovsky; Riqiang Fu; Liliya Vugmeyster
Journal:  J Biol Chem       Date:  2019-02-08       Impact factor: 5.157

3.  Local ordering and dynamics in anisotropic media by magnetic resonance: from liquid crystals to proteins.

Authors:  Eva Meirovitch; Jack H Freed
Journal:  Liq Cryst       Date:  2019-07-01

4.  Deuteron Solid-State NMR Relaxation Measurements Reveal Two Distinct Conformational Exchange Processes in the Disordered N-Terminal Domain of Amyloid-β Fibrils.

Authors:  Liliya Vugmeyster; Dan Fai Au; Dmitry Ostrovsky; Riqiang Fu
Journal:  Chemphyschem       Date:  2019-06-14       Impact factor: 3.102

5.  Molecular structure of an N-terminal phosphorylated β-amyloid fibril.

Authors:  Zhi-Wen Hu; Liliya Vugmeyster; Dan Fai Au; Dmitry Ostrovsky; Yan Sun; Wei Qiang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-16       Impact factor: 11.205

6.  The N-Terminal Domain of Aβ40-Amyloid Fibril: The MOMD Perspective of its Dynamic Structure from NMR Lineshape Analysis.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2022-02-05       Impact factor: 2.991

7.  Comparative Hydrophobic Core Dynamics Between Wild-Type Amyloid-β Fibrils, Glutamate-3 Truncation, and Serine-8 Phosphorylation.

Authors:  Liliya Vugmeyster; Dan Fai Au; Matthew C Smith; Dmitry Ostrovsky
Journal:  Chemphyschem       Date:  2021-12-13       Impact factor: 3.520

8.  Dynamics of Serine-8 Side-Chain in Amyloid-β Fibrils and Fluorenylmethyloxycarbonyl Serine Amino Acid, Investigated by Solid-State Deuteron NMR.

Authors:  Liliya Vugmeyster; Dan Fai Au; Dmitry Ostrovsky; Dillon Ray Lee Rickertsen; Scott M Reed
Journal:  J Phys Chem B       Date:  2020-05-27       Impact factor: 2.991

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.