Literature DB >> 23139700

Microfluidic systems for single DNA dynamics.

Danielle J Mai1, Christopher Brockman, Charles M Schroeder.   

Abstract

Recent advances in microfluidics have enabled the molecular-level study of polymer dynamics using single DNA chains. Single polymer studies based on fluorescence microscopy allow for the direct observation of non-equilibrium polymer conformations and dynamical phenomena such as diffusion, relaxation, and molecular stretching pathways in flow. Microfluidic devices have enabled the precise control of model flow fields to study the non-equilibrium dynamics of soft materials, with device geometries including curved channels, cross-slots, and microfabricated obstacles and structures. This review explores recent microfluidic systems that have advanced the study of single polymer dynamics, while identifying new directions in the field that will further elucidate the relationship between polymer microstructure and bulk rheological properties.

Entities:  

Year:  2012        PMID: 23139700      PMCID: PMC3489478          DOI: 10.1039/C2SM26036K

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  85 in total

1.  Quantitative microfluidic separation of DNA in self-assembled magnetic matrixes.

Authors:  Nicolas Minc; Claus Fütterer; Kevin D Dorfman; Aurélien Bancaud; Charlie Gosse; Cécile Goubault; Jean-Louis Viovy
Journal:  Anal Chem       Date:  2004-07-01       Impact factor: 6.986

2.  DNA molecules descending a nanofluidic staircase by entropophoresis.

Authors:  Samuel M Stavis; Jon Geist; Michael Gaitan; Laurie E Locascio; Elizabeth A Strychalski
Journal:  Lab Chip       Date:  2012-01-26       Impact factor: 6.799

3.  Self-diffusion of an entangled DNA molecule by reptation.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-11-27       Impact factor: 9.161

4.  Relaxation of stretched DNA in slitlike confinement.

Authors:  A Balducci; C-C Hsieh; P S Doyle
Journal:  Phys Rev Lett       Date:  2007-12-06       Impact factor: 9.161

5.  Directed self-organization of single DNA molecules in a nanoslit via embedded nanopit arrays.

Authors:  Walter Reisner; Niels B Larsen; Henrik Flyvbjerg; Jonas O Tegenfeldt; Anders Kristensen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-02       Impact factor: 11.205

6.  Self-associating block copolymer networks for microchip electrophoresis provide enhanced DNA separation via "inchworm" chain dynamics.

Authors:  Thomas N Chiesl; Karl W Putz; Meena Babu; Patrick Mathias; Kashan A Shaikh; Edgar D Goluch; Chang Liu; Annelise E Barron
Journal:  Anal Chem       Date:  2006-07-01       Impact factor: 6.986

7.  Conformational dynamics of individual DNA molecules during gel electrophoresis.

Authors:  D C Schwartz; M Koval
Journal:  Nature       Date:  1989-04-06       Impact factor: 49.962

8.  Nanochannel confinement: DNA stretch approaching full contour length.

Authors:  Yoori Kim; Ki Seok Kim; Kristy L Kounovsky; Rakwoo Chang; Gun Young Jung; Juan J dePablo; Kyubong Jo; David C Schwartz
Journal:  Lab Chip       Date:  2011-03-23       Impact factor: 6.799

9.  Elongation and migration of single DNA molecules in microchannels using oscillatory shear flows.

Authors:  Kyubong Jo; Yeng-Long Chen; Juan J de Pablo; David C Schwartz
Journal:  Lab Chip       Date:  2009-06-10       Impact factor: 6.799

10.  DNA migration mechanism analyses for applications in capillary and microchip electrophoresis.

Authors:  Ryan E Forster; Daniel G Hert; Thomas N Chiesl; Christopher P Fredlake; Annelise E Barron
Journal:  Electrophoresis       Date:  2009-06       Impact factor: 3.535

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  18 in total

1.  Mesoscopic simulation of single DNA dynamics in rotational flows.

Authors:  S Kumar Ranjith
Journal:  Eur Phys J E Soft Matter       Date:  2015-08-28       Impact factor: 1.890

2.  On-chip DNA preconcentration in different media conductivities by electrodeless dielectrophoresis.

Authors:  Shunbo Li; Ziran Ye; Yu Sanna Hui; Yibo Gao; Yusheng Jiang; Weijia Wen
Journal:  Biomicrofluidics       Date:  2015-09-30       Impact factor: 2.800

3.  Determining elasticity from single polymer dynamics.

Authors:  Folarin Latinwo; Charles M Schroeder
Journal:  Soft Matter       Date:  2014-04-07       Impact factor: 3.679

Review 4.  Microfluidic viscometers for shear rheology of complex fluids and biofluids.

Authors:  Siddhartha Gupta; William S Wang; Siva A Vanapalli
Journal:  Biomicrofluidics       Date:  2016-07-05       Impact factor: 2.800

5.  Micro-scale extensional rheometry using hyperbolic converging/diverging channels and jet breakup.

Authors:  Bavand Keshavarz; Gareth H McKinley
Journal:  Biomicrofluidics       Date:  2016-05-25       Impact factor: 2.800

6.  Simple microfluidic stagnation point flow geometries.

Authors:  Greet Dockx; Tom Verwijlen; Wouter Sempels; Mathias Nagel; Paula Moldenaers; Johan Hofkens; Jan Vermant
Journal:  Biomicrofluidics       Date:  2016-06-24       Impact factor: 2.800

7.  Dynamic simulations show repeated narrowing maximizes DNA linearization in elastomeric nanochannels.

Authors:  Minsub Han; Byoung Choul Kim; Toshiki Matsuoka; M D Thouless; Shuichi Takayama
Journal:  Biomicrofluidics       Date:  2016-11-23       Impact factor: 2.800

Review 8.  Flow of DNA in micro/nanofluidics: From fundamentals to applications.

Authors:  Lea Rems; Durgesh Kawale; L James Lee; Pouyan E Boukany
Journal:  Biomicrofluidics       Date:  2016-07-20       Impact factor: 2.800

9.  Combining Microfluidics and Microrheology to Determine Rheological Properties of Soft Matter during Repeated Phase Transitions.

Authors:  Matthew D Wehrman; Melissa J Milstrey; Seth Lindberg; Kelly M Schultz
Journal:  J Vis Exp       Date:  2018-04-19       Impact factor: 1.355

10.  The Statistical Segment Length of DNA: Opportunities for Biomechanical Modeling in Polymer Physics and Next-Generation Genomics.

Authors:  Kevin D Dorfman
Journal:  J Biomech Eng       Date:  2018-02-01       Impact factor: 2.097

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