Literature DB >> 24651921

Determining elasticity from single polymer dynamics.

Folarin Latinwo1, Charles M Schroeder.   

Abstract

The ability to determine polymer elasticity and force-extension relations from polymer dynamics in flow has been challenging, mainly due to difficulties in relating equilibrium properties such as free energy to far-from-equilibrium processes. In this work, we determine polymer elasticity from the dynamic properties of polymer chains in fluid flow using recent advances in statistical mechanics. In this way, we obtain the force-extension relation for DNA from single molecule measurements of polymer dynamics in flow without the need for optical tweezers or bead tethers. We further employ simulations to demonstrate the practicality and applicability of this approach to the dynamics of complex fluids. We investigate the effects of flow type on this analysis method, and we develop scaling laws to relate the work relation to bulk polymer viscometric functions. Taken together, our results show that nonequilibrium work relations can play a key role in the analysis of soft material dynamics.

Entities:  

Year:  2014        PMID: 24651921      PMCID: PMC3966029          DOI: 10.1039/c3sm52042k

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  17 in total

1.  Free energy reconstruction from nonequilibrium single-molecule pulling experiments.

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Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-27       Impact factor: 11.205

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Authors:  Jan Liphardt; Sophie Dumont; Steven B Smith; Ignacio Tinoco; Carlos Bustamante
Journal:  Science       Date:  2002-06-07       Impact factor: 47.728

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Journal:  Phys Rev Lett       Date:  2002-07-15       Impact factor: 9.161

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Authors:  Andrew Pohorille; Christopher Jarzynski; Christophe Chipot
Journal:  J Phys Chem B       Date:  2010-08-19       Impact factor: 2.991

6.  Role of external flow and frame invariance in stochastic thermodynamics.

Authors:  Thomas Speck; Jakob Mehl; Udo Seifert
Journal:  Phys Rev Lett       Date:  2008-04-28       Impact factor: 9.161

7.  Equilibrium microstates which generate second law violating steady states.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1994-08

8.  Stretching of a single tethered polymer in a uniform flow.

Authors:  T T Perkins; D E Smith; R G Larson; S Chu
Journal:  Science       Date:  1995-04-07       Impact factor: 47.728

9.  Elastic turbulence in a polymer solution flow

Authors: 
Journal:  Nature       Date:  2000-05-04       Impact factor: 49.962

10.  Microfluidic systems for single DNA dynamics.

Authors:  Danielle J Mai; Christopher Brockman; Charles M Schroeder
Journal:  Soft Matter       Date:  2012-07-03       Impact factor: 3.679

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  4 in total

Review 1.  Flow of DNA in micro/nanofluidics: From fundamentals to applications.

Authors:  Lea Rems; Durgesh Kawale; L James Lee; Pouyan E Boukany
Journal:  Biomicrofluidics       Date:  2016-07-20       Impact factor: 2.800

2.  Delineating elastic properties of kinesin linker and their sensitivity to point mutations.

Authors:  Michał Świątek; Ewa Gudowska-Nowak
Journal:  Sci Rep       Date:  2020-03-16       Impact factor: 4.379

3.  Electroosmotic Flow of Viscoelastic Fluid through a Constriction Microchannel.

Authors:  Jianyu Ji; Shizhi Qian; Zhaohui Liu
Journal:  Micromachines (Basel)       Date:  2021-04-09       Impact factor: 2.891

4.  Crooks Fluctuation Theorem for Single Polymer Dynamics in Time-Dependent Flows: Understanding Viscoelastic Hysteresis.

Authors:  Yuecheng Zhou; Folarin Latinwo; Charles M Schroeder
Journal:  Entropy (Basel)       Date:  2021-12-24       Impact factor: 2.524

  4 in total

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