Literature DB >> 27493701

Flow of DNA in micro/nanofluidics: From fundamentals to applications.

Lea Rems1, Durgesh Kawale1, L James Lee2, Pouyan E Boukany1.   

Abstract

Thanks to direct observation and manipulation of DNA in micro/nanofluidic devices, we are now able to elucidate the relationship between the polymer microstructure and its rheological properties, as well as to design new single-molecule platforms for biophysics and biomedicine. This allows exploration of many new mechanisms and phenomena, which were previously unachievable with conventional methods such as bulk rheometry tests. For instance, the field of polymer rheology is at a turning point to relate the complex molecular conformations to the nonlinear viscoelasticity of polymeric fluids (such as coil-stretch transition, shear thinning, and stress overshoot in startup shear). In addition, nanofluidic devices provided a starting point for manipulating single DNA molecules by applying basic principles of polymer physics, which is highly relevant to numerous processes in biosciences. In this article, we review recent progress regarding the flow and deformation of DNA in micro/nanofluidic systems from both fundamental and application perspectives. We particularly focus on advances in the understanding of polymer rheology and identify the emerging research trends and challenges, especially with respect to future applications of nanofluidics in the biomedical field.

Entities:  

Year:  2016        PMID: 27493701      PMCID: PMC4958106          DOI: 10.1063/1.4958719

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  151 in total

1.  Separation of long DNA molecules in a microfabricated entropic trap array.

Authors:  J Han; H G Craighead
Journal:  Science       Date:  2000-05-12       Impact factor: 47.728

2.  DNA heterogeneity and phosphorylation unveiled by single-molecule electrophoresis.

Authors:  Hui Wang; James E Dunning; Albert P-H Huang; Jacqueline A Nyamwanda; Daniel Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-01       Impact factor: 11.205

3.  Single-molecule denaturation mapping of DNA in nanofluidic channels.

Authors:  Walter Reisner; Niels B Larsen; Asli Silahtaroglu; Anders Kristensen; Niels Tommerup; Jonas O Tegenfeldt; Henrik Flyvbjerg
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-07       Impact factor: 11.205

4.  Identification of single nucleotides in MoS2 nanopores.

Authors:  Jiandong Feng; Ke Liu; Roman D Bulushev; Sergey Khlybov; Dumitru Dumcenco; Andras Kis; Aleksandra Radenovic
Journal:  Nat Nanotechnol       Date:  2015-09-21       Impact factor: 39.213

5.  Generating highly ordered DNA nanostrand arrays.

Authors:  Jingjiao Guan; L James Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-13       Impact factor: 11.205

6.  Directed self-organization of single DNA molecules in a nanoslit via embedded nanopit arrays.

Authors:  Walter Reisner; Niels B Larsen; Henrik Flyvbjerg; Jonas O Tegenfeldt; Anders Kristensen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-02       Impact factor: 11.205

7.  High-resolution hydrodynamic chromatographic separation of large DNA using narrow, bare open capillaries: a rapid and economical alternative technology to pulsed-field gel electrophoresis?

Authors:  Lei Liu; Vijaykumar Veerappan; Qiaosheng Pu; Chang Cheng; Xiayan Wang; Liping Lu; Randy D Allen; Guangsheng Guo
Journal:  Anal Chem       Date:  2013-12-09       Impact factor: 6.986

8.  Smooth DNA transport through a narrowed pore geometry.

Authors:  Spencer Carson; James Wilson; Aleksei Aksimentiev; Meni Wanunu
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

9.  Nanochannel confinement: DNA stretch approaching full contour length.

Authors:  Yoori Kim; Ki Seok Kim; Kristy L Kounovsky; Rakwoo Chang; Gun Young Jung; Juan J dePablo; Kyubong Jo; David C Schwartz
Journal:  Lab Chip       Date:  2011-03-23       Impact factor: 6.799

10.  Microfluidic systems for single DNA dynamics.

Authors:  Danielle J Mai; Christopher Brockman; Charles M Schroeder
Journal:  Soft Matter       Date:  2012-07-03       Impact factor: 3.679

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  3 in total

1.  Preface to Special Topic: Invited Articles on Microfluidic Rheology.

Authors:  Anke Lindner; Paulo E Arratia
Journal:  Biomicrofluidics       Date:  2016-08-26       Impact factor: 2.800

2.  Microscopic origin of wall slip during flow of an entangled DNA solution in microfluidics: Flow induced chain stretching versus chain desorption.

Authors:  Orin Hemminger; Pouyan E Boukany
Journal:  Biomicrofluidics       Date:  2017-08-31       Impact factor: 2.800

3.  Molecular Processes Leading to "Necking" in Extensional Flow of Polymer Solutions: Using Microfluidics and Single DNA Imaging.

Authors:  Shaurya Sachdev; Aswin Muralidharan; Pouyan E Boukany
Journal:  Macromolecules       Date:  2016-12-15       Impact factor: 5.985

  3 in total

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