Literature DB >> 23125680

1-(Naphthalen-1-yl)-3-[(thio-phen-2-yl)carbon-yl]thio-urea.

Durga P Singh1, Seema Pratap, Sushil K Gupta, Ray J Butcher.   

Abstract

In the title compound, C(16)H(12)N(2)OS(2), the dihedral angles between the mean planes of the central thio-urea core and the thio-phene ring and the naphthalene ring system are 1.8 (2) and 6.45 (18)°, respectively. The mol-ecule adopts a trans-cis conformation with respect to the position of thio-phenoyl and naphthyl groups relative to the S atom across the thiourea C-N bonds. Both the thio-phene ring and the sulfanyl-idene S atom are disordered over two sets of sites with occupancies of 0.862 (3):0.138 (3) and 0.977 (3):0.023 (3), respectively. An intra-molecular N-H⋯O hydrogen bond is observed. The crystal packing features two N-H⋯S hydrogen bonds.

Entities:  

Year:  2012        PMID: 23125680      PMCID: PMC3470236          DOI: 10.1107/S1600536812035350

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For heterocyclic thiourea derivatives, metal complexes and their applications, see: D’hooghe et al. (2005 ▶); Aly et al. (2007 ▶); Estévez-Hernández et al. (2007 ▶); Saeed et al. (2008a ▶,b ▶,c ▶). For related structures, see: Singh et al. (2012 ▶); Koch (2001 ▶); Pérez et al. (2008 ▶). For the synthesis, see: Otazo-Sánchez et al. (2001 ▶).

Experimental

Crystal data

C16H12N2OS2 M = 312.40 Monoclinic, a = 14.929 (2) Å b = 5.9086 (8) Å c = 17.071 (3) Å β = 104.030 (14)° V = 1460.9 (4) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 173 K 0.35 × 0.25 × 0.15 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007 ▶) T min = 0.712, T max = 1.000 4822 measured reflections 2625 independent reflections 1626 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.165 S = 1.09 2625 reflections 210 parameters 10 restraints H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035350/bq2371sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035350/bq2371Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812035350/bq2371Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12N2OS2F(000) = 648
Mr = 312.40Dx = 1.420 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 14.929 (2) ÅCell parameters from 1174 reflections
b = 5.9086 (8) Åθ = 3.3–27.3°
c = 17.071 (3) ŵ = 0.36 mm1
β = 104.030 (14)°T = 173 K
V = 1460.9 (4) Å3Prism, colorless
Z = 40.35 × 0.25 × 0.15 mm
Oxford Diffraction Xcalibur Eos diffractometer2625 independent reflections
Radiation source: Enhance (Mo) X-ray Source1626 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.052
Detector resolution: 16.0938 pixels mm-1θmax = 25.5°, θmin = 3.7°
ω scansh = −18→10
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007)k = −6→7
Tmin = 0.712, Tmax = 1.000l = −17→20
4822 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.165H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.058P)2 + 0.3695P] where P = (Fo2 + 2Fc2)/3
2625 reflections(Δ/σ)max < 0.001
210 parametersΔρmax = 0.33 e Å3
10 restraintsΔρmin = −0.31 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S1A0.962 (3)0.732 (11)0.421 (4)0.0764 (5)0.023 (3)
S1B0.98334 (7)0.6323 (3)0.38685 (9)0.0764 (5)0.977 (3)
S2A0.66455 (8)−0.0348 (2)0.46547 (8)0.0582 (4)0.862 (3)
C13A0.7707 (3)0.0902 (7)0.4715 (3)0.0404 (11)0.862 (3)
C14A0.8378 (4)−0.0413 (13)0.5210 (5)0.0655 (19)0.862 (3)
H14A0.9018−0.00830.53100.079*0.862 (3)
C15A0.8041 (4)−0.2228 (11)0.5543 (4)0.0655 (15)0.862 (3)
H15A0.8419−0.32700.59000.079*0.862 (3)
C16A0.7114 (4)−0.2380 (12)0.5309 (6)0.0695 (14)0.862 (3)
H16A0.6765−0.35150.54960.083*0.862 (3)
S2B0.8612 (8)−0.036 (2)0.5239 (9)0.0582 (4)0.138 (3)
C13B0.7593 (17)0.051 (5)0.4590 (19)0.0404 (11)0.138 (3)
C14B0.6895 (17)−0.046 (5)0.488 (2)0.0655 (19)0.138 (3)
H14B0.62940.01740.48030.079*0.138 (3)
C15B0.716 (2)−0.242 (7)0.530 (4)0.0655 (15)0.138 (3)
H15B0.6767−0.36580.53380.079*0.138 (3)
C16B0.807 (2)−0.233 (7)0.566 (3)0.0695 (14)0.138 (3)
H16B0.8373−0.32730.60970.083*0.138 (3)
O10.69721 (14)0.3590 (3)0.37691 (14)0.0546 (6)
N10.79871 (16)0.6726 (4)0.33310 (16)0.0440 (7)
H1A0.74620.60940.33600.053*
N20.85320 (16)0.3884 (4)0.42315 (16)0.0452 (7)
H2A0.90090.33000.45790.054*
C10.7879 (2)0.8627 (5)0.28085 (19)0.0432 (8)
C20.8584 (2)1.0074 (5)0.2753 (2)0.0541 (9)
H20.91960.97740.30540.065*
C30.8401 (3)1.1985 (5)0.2255 (2)0.0585 (10)
H30.88941.29730.22230.070*
C40.7537 (3)1.2454 (5)0.1817 (2)0.0570 (9)
H40.74291.37780.14920.068*
C50.6798 (2)1.0997 (5)0.1838 (2)0.0468 (8)
C60.5901 (3)1.1427 (6)0.1368 (2)0.0594 (10)
H60.57881.27410.10380.071*
C70.5189 (3)0.9981 (6)0.1379 (2)0.0659 (11)
H70.45871.02970.10600.079*
C80.5347 (2)0.8048 (6)0.1857 (2)0.0574 (10)
H80.48510.70440.18590.069*
C90.6200 (2)0.7578 (5)0.2319 (2)0.0494 (9)
H90.62910.62490.26420.059*
C100.6962 (2)0.9031 (5)0.23326 (19)0.0416 (8)
C110.8727 (2)0.5719 (5)0.37841 (19)0.0434 (8)
C120.7696 (2)0.2864 (5)0.4203 (2)0.0433 (8)
U11U22U33U12U13U23
S1A0.0282 (5)0.1166 (10)0.0801 (9)−0.0049 (6)0.0048 (5)0.0291 (8)
S1B0.0282 (5)0.1166 (10)0.0801 (9)−0.0049 (6)0.0048 (5)0.0291 (8)
S2A0.0543 (7)0.0566 (6)0.0598 (9)−0.0107 (6)0.0061 (5)0.0071 (6)
C13A0.0405 (19)0.035 (2)0.041 (2)−0.0003 (16)0.0015 (16)−0.0068 (18)
C14A0.057 (4)0.064 (3)0.077 (4)0.000 (3)0.020 (4)−0.010 (2)
C15A0.091 (4)0.048 (2)0.051 (3)0.023 (3)0.004 (3)0.006 (2)
C16A0.090 (4)0.053 (3)0.063 (3)−0.015 (3)0.015 (3)0.002 (2)
S2B0.0543 (7)0.0566 (6)0.0598 (9)−0.0107 (6)0.0061 (5)0.0071 (6)
C13B0.0405 (19)0.035 (2)0.041 (2)−0.0003 (16)0.0015 (16)−0.0068 (18)
C14B0.057 (4)0.064 (3)0.077 (4)0.000 (3)0.020 (4)−0.010 (2)
C15B0.091 (4)0.048 (2)0.051 (3)0.023 (3)0.004 (3)0.006 (2)
C16B0.090 (4)0.053 (3)0.063 (3)−0.015 (3)0.015 (3)0.002 (2)
O10.0340 (12)0.0537 (13)0.0694 (16)−0.0034 (10)−0.0006 (11)0.0150 (12)
N10.0286 (13)0.0453 (14)0.0541 (17)−0.0030 (11)0.0021 (12)0.0007 (13)
N20.0302 (13)0.0547 (15)0.0472 (16)0.0030 (12)0.0026 (11)0.0113 (13)
C10.0381 (17)0.0383 (15)0.0503 (19)−0.0019 (14)0.0050 (14)−0.0047 (14)
C20.0455 (19)0.0503 (18)0.067 (2)−0.0095 (16)0.0136 (17)−0.0035 (17)
C30.063 (2)0.0504 (18)0.068 (2)−0.0188 (18)0.0281 (19)−0.0075 (18)
C40.072 (2)0.0452 (17)0.059 (2)−0.0030 (19)0.0254 (19)0.0032 (16)
C50.0516 (19)0.0406 (16)0.050 (2)0.0058 (16)0.0165 (16)−0.0023 (15)
C60.062 (2)0.057 (2)0.059 (2)0.0175 (19)0.0146 (19)0.0156 (18)
C70.051 (2)0.075 (2)0.067 (3)0.018 (2)0.0062 (19)0.017 (2)
C80.0409 (19)0.064 (2)0.065 (2)0.0007 (17)0.0078 (17)0.0111 (19)
C90.0421 (18)0.0506 (17)0.052 (2)−0.0010 (16)0.0044 (15)0.0080 (16)
C100.0387 (17)0.0380 (15)0.0477 (19)0.0024 (14)0.0092 (14)−0.0061 (14)
C110.0342 (16)0.0593 (18)0.0356 (17)−0.0004 (15)0.0065 (13)0.0002 (15)
C120.0322 (16)0.0423 (16)0.0513 (19)0.0028 (14)0.0023 (14)−0.0017 (15)
S1A—C111.65 (5)N1—H1A0.8800
S1B—C111.661 (3)N2—C121.376 (4)
S2A—C16A1.674 (6)N2—C111.397 (4)
S2A—C13A1.729 (4)N2—H2A0.8800
C13A—C14A1.383 (7)C1—C21.377 (4)
C13A—C121.449 (5)C1—C101.432 (4)
C14A—C15A1.365 (8)C2—C31.401 (5)
C14A—H14A0.9500C2—H20.9500
C15A—C16A1.347 (6)C3—C41.353 (5)
C15A—H15A0.9500C3—H30.9500
C16A—H16A0.9500C4—C51.408 (5)
S2B—C16B1.67 (2)C4—H40.9500
S2B—C13B1.728 (19)C5—C61.407 (4)
C13B—C14B1.39 (2)C5—C101.422 (4)
C13B—C121.56 (3)C6—C71.367 (5)
C14B—C15B1.37 (2)C6—H60.9500
C14B—H14B0.9500C7—C81.390 (5)
C15B—C16B1.350 (18)C7—H70.9500
C15B—H15B0.9500C8—C91.354 (4)
C16B—H16B0.9500C8—H80.9500
O1—C121.230 (3)C9—C101.421 (4)
N1—C111.326 (4)C9—H90.9500
N1—C11.419 (4)
C16A—S2A—C13A92.2 (2)C3—C2—H2119.9
C14A—C13A—C12136.0 (5)C4—C3—C2121.3 (3)
C14A—C13A—S2A108.3 (4)C4—C3—H3119.3
C12—C13A—S2A115.4 (3)C2—C3—H3119.3
C15A—C14A—C13A114.2 (5)C3—C4—C5120.6 (3)
C15A—C14A—H14A122.9C3—C4—H4119.7
C13A—C14A—H14A122.9C5—C4—H4119.7
C16A—C15A—C14A112.6 (5)C4—C5—C6121.3 (3)
C16A—C15A—H15A123.7C4—C5—C10119.4 (3)
C14A—C15A—H15A123.7C6—C5—C10119.3 (3)
C15A—C16A—S2A112.5 (5)C7—C6—C5121.0 (3)
C15A—C16A—H16A123.7C7—C6—H6119.5
S2A—C16A—H16A123.7C5—C6—H6119.5
C16B—S2B—C13B92.5 (12)C6—C7—C8119.9 (3)
C14B—C13B—C12133 (2)C6—C7—H7120.0
C14B—C13B—S2B105.6 (15)C8—C7—H7120.0
C12—C13B—S2B112.0 (16)C9—C8—C7120.8 (3)
C15B—C14B—C13B113 (2)C9—C8—H8119.6
C15B—C14B—H14B123.6C7—C8—H8119.6
C13B—C14B—H14B123.6C8—C9—C10121.4 (3)
C16B—C15B—C14B110 (2)C8—C9—H9119.3
C16B—C15B—H15B125.2C10—C9—H9119.3
C14B—C15B—H15B125.2C9—C10—C5117.5 (3)
C15B—C16B—S2B112 (2)C9—C10—C1124.0 (3)
C15B—C16B—H16B124.2C5—C10—C1118.5 (3)
S2B—C16B—H16B124.2N1—C11—N2114.4 (3)
C11—N1—C1132.4 (3)N1—C11—S1A118 (2)
C11—N1—H1A113.8N2—C11—S1A117.1 (18)
C1—N1—H1A113.8N1—C11—S1B128.6 (3)
C12—N2—C11128.9 (2)N2—C11—S1B117.0 (2)
C12—N2—H2A115.5S1A—C11—S1B33 (3)
C11—N2—H2A115.5O1—C12—N2121.7 (3)
C2—C1—N1124.2 (3)O1—C12—C13A121.5 (3)
C2—C1—C10119.9 (3)N2—C12—C13A116.8 (3)
N1—C1—C10115.9 (3)O1—C12—C13B113.8 (9)
C1—C2—C3120.2 (3)N2—C12—C13B123.8 (9)
C1—C2—H2119.9C13A—C12—C13B11.9 (13)
C16A—S2A—C13A—C14A3.3 (6)C4—C5—C10—C9−178.4 (3)
C16A—S2A—C13A—C12178.1 (5)C6—C5—C10—C90.4 (5)
C12—C13A—C14A—C15A−176.1 (6)C4—C5—C10—C11.4 (4)
S2A—C13A—C14A—C15A−2.9 (8)C6—C5—C10—C1−179.8 (3)
C13A—C14A—C15A—C16A0.8 (11)C2—C1—C10—C9176.9 (3)
C14A—C15A—C16A—S2A1.9 (11)N1—C1—C10—C9−4.5 (5)
C13A—S2A—C16A—C15A−3.0 (8)C2—C1—C10—C5−2.8 (5)
C16B—S2B—C13B—C14B13 (4)N1—C1—C10—C5175.8 (3)
C16B—S2B—C13B—C12164 (3)C1—N1—C11—N2178.7 (3)
C12—C13B—C14B—C15B−169 (4)C1—N1—C11—S1A35 (3)
S2B—C13B—C14B—C15B−27 (5)C1—N1—C11—S1B−2.6 (5)
C13B—C14B—C15B—C16B30 (6)C12—N2—C11—N17.1 (5)
C14B—C15B—C16B—S2B−19 (7)C12—N2—C11—S1A151 (3)
C13B—S2B—C16B—C15B3 (5)C12—N2—C11—S1B−171.6 (3)
C11—N1—C1—C2−9.6 (5)C11—N2—C12—O1−3.4 (5)
C11—N1—C1—C10171.8 (3)C11—N2—C12—C13A177.1 (3)
N1—C1—C2—C3−176.2 (3)C11—N2—C12—C13B165.9 (17)
C10—C1—C2—C32.3 (5)C14A—C13A—C12—O1174.0 (6)
C1—C2—C3—C4−0.2 (5)S2A—C13A—C12—O11.2 (5)
C2—C3—C4—C5−1.3 (5)C14A—C13A—C12—N2−6.5 (8)
C3—C4—C5—C6−178.1 (3)S2A—C13A—C12—N2−179.4 (3)
C3—C4—C5—C100.7 (5)C14A—C13A—C12—C13B122 (7)
C4—C5—C6—C7178.6 (4)S2A—C13A—C12—C13B−51 (6)
C10—C5—C6—C7−0.2 (5)C14B—C13B—C12—O1−36 (4)
C5—C6—C7—C8−0.3 (6)S2B—C13B—C12—O1−176.6 (15)
C6—C7—C8—C90.4 (6)C14B—C13B—C12—N2154 (3)
C7—C8—C9—C10−0.2 (5)S2B—C13B—C12—N213 (3)
C8—C9—C10—C5−0.3 (5)C14B—C13B—C12—C13A96 (9)
C8—C9—C10—C1180.0 (3)S2B—C13B—C12—C13A−44 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.881.862.615 (3)143
N2—H2A···S2B0.882.573.026 (14)113
N2—H2A···S1Ai0.882.563.41 (4)164
N2—H2A···S1Bi0.882.803.557 (3)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O10.881.862.615 (3)143
N2—H2A⋯S2B 0.882.573.026 (14)113
N2—H2A⋯S1A i 0.882.563.41 (4)164
N2—H2A⋯S1B i 0.882.803.557 (3)145

Symmetry code: (i) .

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