| Literature DB >> 21203269 |
Sohail Saeed, Moazzam Hussain Bhatti, Uzma Yunus, Peter G Jones.
Abstract
The title compound, C(13)H(16)N(2)O(2)S, crystallizes in the thio-amide form with an intra-molecular hydrogen bond of type N-H⋯O(butyr-yl). Mol-ecules are linked into chains parallel to [10] by a further hydrogen bond of type N-H⋯O(acet-yl). C-H⋯O and C-H⋯S hydrogen bonds are also present.Entities:
Year: 2008 PMID: 21203269 PMCID: PMC2962175 DOI: 10.1107/S1600536808022095
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H16N2O2S | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 458 K |
| Mo | |
| Cell parameters from 13985 reflections | |
| θ = 2.6–30.6º | |
| α = 65.283 (5)º | µ = 0.25 mm−1 |
| β = 76.245 (4)º | |
| γ = 68.589 (5)º | Tablet, pale yellow |
| 0.35 × 0.20 × 0.10 mm |
| Oxford Diffraction Xcalibur S diffractometer | 3613 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 3036 reflections with |
| Monochromator: graphite | |
| Detector resolution: 16 pixels mm-1 | θmax = 30.7º |
| θmin = 2.6º | |
| ω scans | |
| Absorption correction: multi-scan(CrysAlis RED; Oxford Diffraction, 2008) | |
| 22401 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max = 0.003 | |
| 3613 reflections | Δρmax = 0.45 e Å−3 |
| 173 parameters | Δρmin = −0.22 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S | 0.29224 (4) | 0.76793 (3) | 0.30824 (3) | 0.01606 (9) | |
| O1 | 0.44460 (12) | 0.23350 (9) | 0.43763 (8) | 0.01882 (17) | |
| O2 | 1.01149 (11) | 0.57384 (9) | −0.32905 (8) | 0.01832 (17) | |
| N1 | 0.30196 (13) | 0.47376 (10) | 0.46308 (9) | 0.01281 (18) | |
| H01 | 0.223 (2) | 0.5166 (17) | 0.5163 (15) | 0.020 (3)* | |
| N2 | 0.50761 (13) | 0.49957 (11) | 0.26018 (9) | 0.01395 (18) | |
| H02 | 0.522 (2) | 0.4018 (19) | 0.2950 (17) | 0.032 (4)* | |
| C1 | 0.19337 (17) | 0.00779 (13) | 0.85964 (12) | 0.0201 (2) | |
| H1A | 0.2003 | 0.0630 | 0.9169 | 0.030* | |
| H1B | 0.2504 | −0.1064 | 0.9066 | 0.030* | |
| H1C | 0.0587 | 0.0302 | 0.8482 | 0.030* | |
| C2 | 0.30349 (17) | 0.06471 (12) | 0.71538 (12) | 0.0192 (2) | |
| H2A | 0.4416 | 0.0343 | 0.7261 | 0.023* | |
| H2B | 0.2907 | 0.0134 | 0.6556 | 0.023* | |
| C3 | 0.22642 (15) | 0.24316 (12) | 0.64468 (11) | 0.0149 (2) | |
| H3A | 0.0909 | 0.2712 | 0.6285 | 0.018* | |
| H3B | 0.2281 | 0.2925 | 0.7096 | 0.018* | |
| C4 | 0.33675 (14) | 0.31196 (12) | 0.50663 (11) | 0.0134 (2) | |
| C5 | 0.37498 (14) | 0.57496 (12) | 0.33954 (10) | 0.01180 (19) | |
| C6 | 0.60770 (14) | 0.55630 (12) | 0.12737 (10) | 0.01210 (19) | |
| C7 | 0.70848 (15) | 0.44211 (12) | 0.06708 (11) | 0.0145 (2) | |
| H7 | 0.7064 | 0.3359 | 0.1171 | 0.017* | |
| C8 | 0.81080 (15) | 0.48184 (12) | −0.06408 (11) | 0.0145 (2) | |
| H8 | 0.8775 | 0.4033 | −0.1039 | 0.017* | |
| C9 | 0.81661 (14) | 0.63750 (12) | −0.13858 (11) | 0.0126 (2) | |
| C10 | 0.71839 (15) | 0.74982 (12) | −0.07705 (11) | 0.0148 (2) | |
| H10 | 0.7227 | 0.8555 | −0.1264 | 0.018* | |
| C11 | 0.61396 (15) | 0.71148 (12) | 0.05482 (11) | 0.0148 (2) | |
| H11 | 0.5478 | 0.7900 | 0.0949 | 0.018* | |
| C12 | 0.92871 (14) | 0.67675 (12) | −0.27915 (11) | 0.0143 (2) | |
| C13 | 0.93843 (19) | 0.84247 (14) | −0.35931 (12) | 0.0241 (3) | |
| H13A | 1.0270 | 0.8463 | −0.4451 | 0.036* | |
| H13B | 0.9845 | 0.8759 | −0.3005 | 0.036* | |
| H13C | 0.8102 | 0.9136 | −0.3848 | 0.036* |
| S | 0.01598 (13) | 0.01249 (13) | 0.01624 (14) | −0.00382 (9) | 0.00445 (9) | −0.00563 (10) |
| O1 | 0.0236 (4) | 0.0161 (4) | 0.0159 (4) | −0.0068 (3) | 0.0050 (3) | −0.0081 (3) |
| O2 | 0.0209 (4) | 0.0178 (4) | 0.0143 (4) | −0.0047 (3) | 0.0052 (3) | −0.0086 (3) |
| N1 | 0.0140 (4) | 0.0132 (4) | 0.0103 (4) | −0.0044 (3) | 0.0036 (3) | −0.0058 (3) |
| N2 | 0.0168 (4) | 0.0127 (4) | 0.0110 (4) | −0.0054 (3) | 0.0035 (3) | −0.0050 (3) |
| C1 | 0.0255 (5) | 0.0160 (5) | 0.0161 (5) | −0.0089 (4) | 0.0005 (4) | −0.0023 (4) |
| C2 | 0.0232 (5) | 0.0127 (5) | 0.0181 (5) | −0.0055 (4) | 0.0031 (4) | −0.0050 (4) |
| C3 | 0.0153 (5) | 0.0142 (5) | 0.0127 (5) | −0.0054 (4) | 0.0024 (4) | −0.0037 (4) |
| C4 | 0.0137 (4) | 0.0148 (5) | 0.0120 (5) | −0.0052 (4) | −0.0007 (4) | −0.0048 (4) |
| C5 | 0.0112 (4) | 0.0149 (5) | 0.0100 (5) | −0.0049 (3) | −0.0002 (3) | −0.0048 (4) |
| C6 | 0.0117 (4) | 0.0153 (5) | 0.0095 (4) | −0.0050 (4) | 0.0010 (3) | −0.0051 (4) |
| C7 | 0.0163 (5) | 0.0132 (5) | 0.0138 (5) | −0.0052 (4) | 0.0017 (4) | −0.0059 (4) |
| C8 | 0.0148 (4) | 0.0148 (5) | 0.0139 (5) | −0.0041 (4) | 0.0013 (4) | −0.0072 (4) |
| C9 | 0.0124 (4) | 0.0155 (5) | 0.0099 (5) | −0.0043 (4) | 0.0001 (4) | −0.0051 (4) |
| C10 | 0.0171 (5) | 0.0139 (5) | 0.0126 (5) | −0.0054 (4) | 0.0017 (4) | −0.0052 (4) |
| C11 | 0.0172 (5) | 0.0141 (5) | 0.0131 (5) | −0.0044 (4) | 0.0024 (4) | −0.0073 (4) |
| C12 | 0.0143 (4) | 0.0165 (5) | 0.0112 (5) | −0.0048 (4) | 0.0008 (4) | −0.0054 (4) |
| C13 | 0.0345 (6) | 0.0192 (5) | 0.0167 (5) | −0.0126 (5) | 0.0104 (5) | −0.0077 (4) |
| S—C5 | 1.6629 (11) | C12—C13 | 1.4993 (15) |
| O1—C4 | 1.2246 (13) | N1—H01 | 0.835 (16) |
| O2—C12 | 1.2243 (13) | N2—H02 | 0.840 (16) |
| N1—C4 | 1.3864 (13) | C1—H1A | 0.9800 |
| N1—C5 | 1.3948 (12) | C1—H1B | 0.9800 |
| N2—C5 | 1.3458 (13) | C1—H1C | 0.9800 |
| N2—C6 | 1.4061 (12) | C2—H2A | 0.9900 |
| C1—C2 | 1.5245 (15) | C2—H2B | 0.9900 |
| C2—C3 | 1.5185 (14) | C3—H3A | 0.9900 |
| C3—C4 | 1.5036 (14) | C3—H3B | 0.9900 |
| C6—C11 | 1.3949 (14) | C7—H7 | 0.9500 |
| C6—C7 | 1.4008 (14) | C8—H8 | 0.9500 |
| C7—C8 | 1.3807 (14) | C10—H10 | 0.9500 |
| C8—C9 | 1.3999 (14) | C11—H11 | 0.9500 |
| C9—C10 | 1.3923 (14) | C13—H13A | 0.9800 |
| C9—C12 | 1.4856 (14) | C13—H13B | 0.9800 |
| C10—C11 | 1.3921 (14) | C13—H13C | 0.9800 |
| C4—N1—C5 | 128.62 (9) | H1A—C1—H1B | 109.5 |
| C5—N2—C6 | 131.77 (9) | C2—C1—H1C | 109.5 |
| C3—C2—C1 | 110.45 (9) | H1A—C1—H1C | 109.5 |
| C4—C3—C2 | 114.32 (8) | H1B—C1—H1C | 109.5 |
| O1—C4—N1 | 122.98 (9) | C3—C2—H2A | 109.6 |
| O1—C4—C3 | 123.40 (9) | C1—C2—H2A | 109.6 |
| N1—C4—C3 | 113.60 (9) | C3—C2—H2B | 109.6 |
| N2—C5—N1 | 113.62 (9) | C1—C2—H2B | 109.6 |
| N2—C5—S | 128.35 (8) | H2A—C2—H2B | 108.1 |
| N1—C5—S | 118.03 (7) | C4—C3—H3A | 108.7 |
| C11—C6—C7 | 119.43 (9) | C2—C3—H3A | 108.7 |
| C11—C6—N2 | 125.91 (9) | C4—C3—H3B | 108.7 |
| C7—C6—N2 | 114.66 (9) | C2—C3—H3B | 108.7 |
| C8—C7—C6 | 120.86 (9) | H3A—C3—H3B | 107.6 |
| C7—C8—C9 | 120.25 (10) | C8—C7—H7 | 119.6 |
| C10—C9—C8 | 118.54 (9) | C6—C7—H7 | 119.6 |
| C10—C9—C12 | 122.35 (9) | C7—C8—H8 | 119.9 |
| C8—C9—C12 | 119.11 (9) | C9—C8—H8 | 119.9 |
| C11—C10—C9 | 121.78 (9) | C11—C10—H10 | 119.1 |
| C10—C11—C6 | 119.12 (9) | C9—C10—H10 | 119.1 |
| O2—C12—C9 | 119.80 (9) | C10—C11—H11 | 120.4 |
| O2—C12—C13 | 120.49 (9) | C6—C11—H11 | 120.4 |
| C9—C12—C13 | 119.71 (9) | C12—C13—H13A | 109.5 |
| C4—N1—H01 | 115.4 (10) | C12—C13—H13B | 109.5 |
| C5—N1—H01 | 115.9 (10) | H13A—C13—H13B | 109.5 |
| C5—N2—H02 | 111.5 (11) | C12—C13—H13C | 109.5 |
| C6—N2—H02 | 116.4 (11) | H13A—C13—H13C | 109.5 |
| C2—C1—H1A | 109.5 | H13B—C13—H13C | 109.5 |
| C2—C1—H1B | 109.5 | ||
| C1—C2—C3—C4 | 175.26 (9) | C6—C7—C8—C9 | 0.55 (16) |
| C5—N1—C4—O1 | 0.85 (17) | C7—C8—C9—C10 | 0.39 (15) |
| C5—N1—C4—C3 | −177.92 (9) | C7—C8—C9—C12 | 179.66 (9) |
| C2—C3—C4—O1 | 18.45 (15) | C8—C9—C10—C11 | −0.70 (16) |
| C2—C3—C4—N1 | −162.79 (9) | C12—C9—C10—C11 | −179.95 (10) |
| C6—N2—C5—N1 | 176.36 (10) | C9—C10—C11—C6 | 0.07 (16) |
| C6—N2—C5—S | −3.91 (17) | C7—C6—C11—C10 | 0.87 (15) |
| C4—N1—C5—N2 | −5.70 (15) | N2—C6—C11—C10 | −179.38 (10) |
| C4—N1—C5—S | 174.53 (8) | C10—C9—C12—O2 | −179.50 (10) |
| C5—N2—C6—C11 | 11.68 (18) | C8—C9—C12—O2 | 1.26 (15) |
| C5—N2—C6—C7 | −168.56 (11) | C10—C9—C12—C13 | 0.06 (16) |
| C11—C6—C7—C8 | −1.19 (16) | C8—C9—C12—C13 | −179.18 (10) |
| N2—C6—C7—C8 | 179.03 (9) |
| H··· | ||||
| N2—H02···O1 | 0.840 (16) | 1.874 (16) | 2.6211 (12) | 147.4 (16) |
| N1—H01···O2i | 0.835 (16) | 2.087 (16) | 2.9057 (12) | 166.7 (13) |
| C3—H3B···O2i | 0.99 | 2.54 | 3.1345 (13) | 118 |
| C1—H1C···Sii | 0.98 | 3.01 | 3.8996 (13) | 151 |
| C3—H3A···Sii | 0.99 | 2.92 | 3.8444 (11) | 155 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H02⋯O1 | 0.840 (16) | 1.874 (16) | 2.6211 (12) | 147.4 (16) |
| N1—H01⋯O2i | 0.835 (16) | 2.087 (16) | 2.9057 (12) | 166.7 (13) |
| C3—H3 | 0.99 | 2.54 | 3.1345 (13) | 118 |
| C1—H1 | 0.98 | 3.01 | 3.8996 (13) | 151 |
| C3—H3 | 0.99 | 2.92 | 3.8444 (11) | 155 |
Symmetry codes: (i) ; (ii) .