Literature DB >> 23100409

Mapping a complete neural population in the retina.

Olivier Marre1, Dario Amodei, Nikhil Deshmukh, Kolia Sadeghi, Frederick Soo, Timothy E Holy, Michael J Berry.   

Abstract

Recording simultaneously from essentially all of the relevant neurons in a local circuit is crucial to understand how they collectively represent information. Here we show that the combination of a large, dense multielectrode array and a novel, mostly automated spike-sorting algorithm allowed us to record simultaneously from a highly overlapping population of >200 ganglion cells in the salamander retina. By combining these methods with labeling and imaging, we showed that up to 95% of the ganglion cells over the area of the array were recorded. By measuring the coverage of visual space by the receptive fields of the recorded cells, we concluded that our technique captured a neural population that forms an essentially complete representation of a region of visual space. This completeness allowed us to determine the spatial layout of different cell types as well as identify a novel group of ganglion cells that responded reliably to a set of naturalistic and artificial stimuli but had no measurable receptive field. Thus, our method allows unprecedented access to the complete neural representation of visual information, a crucial step for the understanding of population coding in sensory systems.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23100409      PMCID: PMC3664031          DOI: 10.1523/JNEUROSCI.0723-12.2012

Source DB:  PubMed          Journal:  J Neurosci        ISSN: 0270-6474            Impact factor:   6.167


  46 in total

1.  Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering.

Authors:  R Quian Quiroga; Z Nadasdy; Y Ben-Shaul
Journal:  Neural Comput       Date:  2004-08       Impact factor: 2.026

2.  Recording spikes from a large fraction of the ganglion cells in a retinal patch.

Authors:  Ronen Segev; Joe Goodhouse; Jason Puchalla; Michael J Berry
Journal:  Nat Neurosci       Date:  2004-10       Impact factor: 24.884

3.  Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex.

Authors:  Kenichi Ohki; Sooyoung Chung; Yeang H Ch'ng; Prakash Kara; R Clay Reid
Journal:  Nature       Date:  2005-01-19       Impact factor: 49.962

4.  Functional organization of ganglion cells in the salamander retina.

Authors:  Ronen Segev; Jason Puchalla; Michael J Berry
Journal:  J Neurophysiol       Date:  2005-11-23       Impact factor: 2.714

5.  Weak pairwise correlations imply strongly correlated network states in a neural population.

Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

6.  The neurons of the retinal ganglion cell layer of the guinea pig: quantitative analysis of their distribution and size.

Authors:  J L Do-Nascimento; R S Do-Nascimento; B A Damasceno; L C Silveira
Journal:  Braz J Med Biol Res       Date:  1991       Impact factor: 2.590

7.  Spatial organization of neuronal population responses in layer 2/3 of rat barrel cortex.

Authors:  Jason N D Kerr; Christiaan P J de Kock; David S Greenberg; Randy M Bruno; Bert Sakmann; Fritjof Helmchen
Journal:  J Neurosci       Date:  2007-11-28       Impact factor: 6.167

8.  A retinal circuit that computes object motion.

Authors:  Stephen A Baccus; Bence P Olveczky; Mihai Manu; Markus Meister
Journal:  J Neurosci       Date:  2008-07-02       Impact factor: 6.167

9.  Variability of extracellular spike waveforms of cortical neurons.

Authors:  M S Fee; P P Mitra; D Kleinfeld
Journal:  J Neurophysiol       Date:  1996-12       Impact factor: 2.714

10.  Organization of the retina of the mudpuppy, Necturus maculosus. II. Intracellular recording.

Authors:  F S Werblin; J E Dowling
Journal:  J Neurophysiol       Date:  1969-05       Impact factor: 2.714

View more
  62 in total

1.  Robust spike sorting of retinal ganglion cells tuned to spot stimuli.

Authors:  Alireza Ghahari; Tudor C Badea
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2016-08

Review 2.  Recent progress in multi-electrode spike sorting methods.

Authors:  Baptiste Lefebvre; Pierre Yger; Olivier Marre
Journal:  J Physiol Paris       Date:  2017-03-02

3.  Robust encoding of stimulus identity and concentration in the accessory olfactory system.

Authors:  Hannah A Arnson; Timothy E Holy
Journal:  J Neurosci       Date:  2013-08-14       Impact factor: 6.167

4.  Physical principles for scalable neural recording.

Authors:  Adam H Marblestone; Bradley M Zamft; Yael G Maguire; Mikhail G Shapiro; Thaddeus R Cybulski; Joshua I Glaser; Dario Amodei; P Benjamin Stranges; Reza Kalhor; David A Dalrymple; Dongjin Seo; Elad Alon; Michel M Maharbiz; Jose M Carmena; Jan M Rabaey; Edward S Boyden; George M Church; Konrad P Kording
Journal:  Front Comput Neurosci       Date:  2013-10-21       Impact factor: 2.380

5.  Predictive information in a sensory population.

Authors:  Stephanie E Palmer; Olivier Marre; Michael J Berry; William Bialek
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-18       Impact factor: 11.205

6.  Anatomical identification of extracellularly recorded cells in large-scale multielectrode recordings.

Authors:  Peter H Li; Jeffrey L Gauthier; Max Schiff; Alexander Sher; Daniel Ahn; Greg D Field; Martin Greschner; Edward M Callaway; Alan M Litke; E J Chichilnisky
Journal:  J Neurosci       Date:  2015-03-18       Impact factor: 6.167

7.  SHYBRID: A Graphical Tool for Generating Hybrid Ground-Truth Spiking Data for Evaluating Spike Sorting Performance.

Authors:  Jasper Wouters; Fabian Kloosterman; Alexander Bertrand
Journal:  Neuroinformatics       Date:  2021-01

8.  Large-scale mapping of cortical synaptic projections with extracellular electrode arrays.

Authors:  Mark Shein-Idelson; Lorenz Pammer; Mike Hemberger; Gilles Laurent
Journal:  Nat Methods       Date:  2017-08-14       Impact factor: 28.547

9.  A Tractable Method for Describing Complex Couplings between Neurons and Population Rate.

Authors:  Christophe Gardella; Olivier Marre; Thierry Mora
Journal:  eNeuro       Date:  2016-08-18

10.  Spike sorting of synchronous spikes from local neuron ensembles.

Authors:  Felix Franke; Robert Pröpper; Henrik Alle; Philipp Meier; Jörg R P Geiger; Klaus Obermayer; Matthias H J Munk
Journal:  J Neurophysiol       Date:  2015-08-19       Impact factor: 2.714

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.