Literature DB >> 28268664

Robust spike sorting of retinal ganglion cells tuned to spot stimuli.

Alireza Ghahari, Tudor C Badea.   

Abstract

We propose an automatic spike sorting approach for the data recorded from a microelectrode array during visual stimulation of wild type retinas with tiled spot stimuli. The approach first detects individual spikes per electrode by their signature local minima. With the mixture probability distribution of the local minima estimated afterwards, it applies a minimum-squared-error clustering algorithm to sort the spikes into different clusters. A template waveform for each cluster per electrode is defined, and a number of reliability tests are performed on it and its corresponding spikes. Finally, a divisive hierarchical clustering algorithm is used to deal with the correlated templates per cluster type across all the electrodes. According to the measures of performance of the spike sorting approach, it is robust even in the cases of recordings with low signal-to-noise ratio.

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Year:  2016        PMID: 28268664      PMCID: PMC5587172          DOI: 10.1109/EMBC.2016.7591054

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  9 in total

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Authors:  K D Harris; D A Henze; J Csicsvari; H Hirase; G Buzsáki
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2.  A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays.

Authors:  G J McLachlan; R W Bean; L Ben-Tovim Jones
Journal:  Bioinformatics       Date:  2006-04-21       Impact factor: 6.937

3.  Dominant sets and pairwise clustering.

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Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2007-01       Impact factor: 6.226

4.  Automatic spike detection based on adaptive template matching for extracellular neural recordings.

Authors:  Sunghan Kim; James McNames
Journal:  J Neurosci Methods       Date:  2007-06-07       Impact factor: 2.390

5.  Quality metrics to accompany spike sorting of extracellular signals.

Authors:  Daniel N Hill; Samar B Mehta; David Kleinfeld
Journal:  J Neurosci       Date:  2011-06-15       Impact factor: 6.167

6.  Mapping a complete neural population in the retina.

Authors:  Olivier Marre; Dario Amodei; Nikhil Deshmukh; Kolia Sadeghi; Frederick Soo; Timothy E Holy; Michael J Berry
Journal:  J Neurosci       Date:  2012-10-24       Impact factor: 6.167

7.  Fast, scalable, Bayesian spike identification for multi-electrode arrays.

Authors:  Jason S Prentice; Jan Homann; Kristina D Simmons; Gašper Tkačik; Vijay Balasubramanian; Philip C Nelson
Journal:  PLoS One       Date:  2011-07-20       Impact factor: 3.240

8.  Bayes optimal template matching for spike sorting - combining fisher discriminant analysis with optimal filtering.

Authors:  Felix Franke; Rodrigo Quian Quiroga; Andreas Hierlemann; Klaus Obermayer
Journal:  J Comput Neurosci       Date:  2015-02-05       Impact factor: 1.621

9.  Spike sorting for large, dense electrode arrays.

Authors:  Cyrille Rossant; Shabnam N Kadir; Dan F M Goodman; John Schulman; Maximilian L D Hunter; Aman B Saleem; Andres Grosmark; Mariano Belluscio; George H Denfield; Alexander S Ecker; Andreas S Tolias; Samuel Solomon; Gyorgy Buzsaki; Matteo Carandini; Kenneth D Harris
Journal:  Nat Neurosci       Date:  2016-03-14       Impact factor: 24.884

  9 in total
  1 in total

1.  Identification of Retinal Ganglion Cell Firing Patterns Using Clustering Analysis Supplied with Failure Diagnosis.

Authors:  Alireza Ghahari; Sumit R Kumar; Tudor C Badea
Journal:  Int J Neural Syst       Date:  2018-02-22       Impact factor: 5.866

  1 in total

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