Literature DB >> 23063780

Type of noise defines global attractors in bistable molecular regulatory systems.

Joanna Jaruszewicz1, Pawel J Zuk, Tomasz Lipniacki.   

Abstract

The aim of this study is to demonstrate that in molecular dynamical systems with the underlying bi- or multistability, the type of noise determines the most strongly attracting steady state or stochastic attractor. As an example we consider a simple stochastic model of autoregulatory gene with a nonlinear positive feedback, which in the deterministic approximation has two stable steady state solutions. Three types of noise are considered: transcriptional and translational - due to the small number of gene product molecules and the gene switching noise - due to gene activation and inactivation transitions. We demonstrate that the type of noise in addition to the noise magnitude dictates the allocation of probability mass between the two stable steady states. In particular, we found that when the gene switching noise dominates over the transcriptional and translational noise (which is characteristic of eukaryotes), the gene preferentially activates, while in the opposite case, when the transcriptional noise dominates (which is characteristic of prokaryotes) the gene preferentially remains inactive. Moreover, even in the zero-noise limit, when the probability mass generically concentrates in the vicinity of one of two steady states, the choice of the most strongly attracting steady state is noise type-dependent. Although the epigenetic attractors are defined with the aid of the deterministic approximation of the stochastic regulatory process, their relative attractivity is controlled by the type of noise, in addition to noise magnitude. Since noise characteristics vary during the cell cycle and development, such mode of regulation can be potentially employed by cells to switch between alternative epigenetic attractors.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23063780      PMCID: PMC3677133          DOI: 10.1016/j.jtbi.2012.10.004

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  62 in total

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  8 in total

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Journal:  PLoS Comput Biol       Date:  2016-10-21       Impact factor: 4.475

7.  Gene switching rate determines response to extrinsic perturbations in the self-activation transcriptional network motif.

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8.  Bursting noise in gene expression dynamics: linking microscopic and mesoscopic models.

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Journal:  J R Soc Interface       Date:  2016-01       Impact factor: 4.118

  8 in total

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