Literature DB >> 14973486

Multistability in the lactose utilization network of Escherichia coli.

Ertugrul M Ozbudak1, Mukund Thattai, Han N Lim, Boris I Shraiman, Alexander Van Oudenaarden.   

Abstract

Multistability, the capacity to achieve multiple internal states in response to a single set of external inputs, is the defining characteristic of a switch. Biological switches are essential for the determination of cell fate in multicellular organisms, the regulation of cell-cycle oscillations during mitosis and the maintenance of epigenetic traits in microbes. The multistability of several natural and synthetic systems has been attributed to positive feedback loops in their regulatory networks. However, feedback alone does not guarantee multistability. The phase diagram of a multistable system, a concise description of internal states as key parameters are varied, reveals the conditions required to produce a functional switch. Here we present the phase diagram of the bistable lactose utilization network of Escherichia coli. We use this phase diagram, coupled with a mathematical model of the network, to quantitatively investigate processes such as sugar uptake and transcriptional regulation in vivo. We then show how the hysteretic response of the wild-type system can be converted to an ultrasensitive graded response. The phase diagram thus serves as a sensitive probe of molecular interactions and as a powerful tool for rational network design.

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Year:  2004        PMID: 14973486     DOI: 10.1038/nature02298

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  358 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

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Authors:  S Ghosh; S Banerjee; I Bose
Journal:  Eur Phys J E Soft Matter       Date:  2012-02-23       Impact factor: 1.890

3.  Digital nature of the immediate-early transcriptional response.

Authors:  Michelle Stevense; Tetsuya Muramoto; Iris Müller; Jonathan R Chubb
Journal:  Development       Date:  2010-02       Impact factor: 6.868

4.  Bimodal gene expression in noncooperative regulatory systems.

Authors:  Anna Ochab-Marcinek; Marcin Tabaka
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-06       Impact factor: 11.205

5.  Bistability in biochemical signaling models.

Authors:  Eric A Sobie
Journal:  Sci Signal       Date:  2011-09-20       Impact factor: 8.192

6.  Single-cell protein dynamics reproduce universal fluctuations in cell populations.

Authors:  Naama Brenner; Erez Braun; Anna Yoney; Lee Susman; James Rotella; Hanna Salman
Journal:  Eur Phys J E Soft Matter       Date:  2015-09-28       Impact factor: 1.890

7.  Design of a bistable switch to control cellular uptake.

Authors:  Diego A Oyarzún; Madalena Chaves
Journal:  J R Soc Interface       Date:  2015-12-06       Impact factor: 4.118

8.  Robust, tunable genetic memory from protein sequestration combined with positive feedback.

Authors:  Tatenda Shopera; William R Henson; Andrew Ng; Young Je Lee; Kenneth Ng; Tae Seok Moon
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

9.  Intrinsically Disordered Proteins Drive Emergence and Inheritance of Biological Traits.

Authors:  Sohini Chakrabortee; James S Byers; Sandra Jones; David M Garcia; Bhupinder Bhullar; Amelia Chang; Richard She; Laura Lee; Brayon Fremin; Susan Lindquist; Daniel F Jarosz
Journal:  Cell       Date:  2016-09-29       Impact factor: 41.582

Review 10.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

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