Literature DB >> 23049166

Fisher information matrix for branching processes with application to electron-multiplying charge-coupled devices.

Jerry Chao1, E Sally Ward, Raimund J Ober.   

Abstract

The high quantum efficiency of the charge-coupled device (CCD) has rendered it the imaging technology of choice in diverse applications. However, under extremely low light conditions where few photons are detected from the imaged object, the CCD becomes unsuitable as its readout noise can easily overwhelm the weak signal. An intended solution to this problem is the electron-multiplying charge-coupled device (EMCCD), which stochastically amplifies the acquired signal to drown out the readout noise. Here, we develop the theory for calculating the Fisher information content of the amplified signal, which is modeled as the output of a branching process. Specifically, Fisher information expressions are obtained for a general and a geometric model of amplification, as well as for two approximations of the amplified signal. All expressions pertain to the important scenario of a Poisson-distributed initial signal, which is characteristic of physical processes such as photon detection. To facilitate the investigation of different data models, a "noise coefficient" is introduced which allows the analysis and comparison of Fisher information via a scalar quantity. We apply our results to the problem of estimating the location of a point source from its image, as observed through an optical microscope and detected by an EMCCD.

Entities:  

Year:  2012        PMID: 23049166      PMCID: PMC3461312          DOI: 10.1007/s11045-011-0150-7

Source DB:  PubMed          Journal:  Multidimens Syst Signal Process        ISSN: 0923-6082            Impact factor:   2.030


  12 in total

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2.  Localization accuracy in single-molecule microscopy.

Authors:  Raimund J Ober; Sripad Ram; E Sally Ward
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3.  Localization capability and limitation of electron-multiplying charge-coupled, scientific complementary metal-oxide semiconductor, and charge-coupled devices for superresolution imaging.

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5.  High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells.

Authors:  Sripad Ram; Prashant Prabhat; Jerry Chao; E Sally Ward; Raimund J Ober
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Review 6.  Do-it-yourself guide: how to use the modern single-molecule toolkit.

Authors:  Nils G Walter; Cheng-Yen Huang; Anthony J Manzo; Mohamed A Sobhy
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

7.  Precision analysis for standard deviation measurements of immobile single fluorescent molecule images.

Authors:  Michael C DeSantis; Shawn H DeCenzo; Je-Luen Li; Y M Wang
Journal:  Opt Express       Date:  2010-03-29       Impact factor: 3.894

8.  Localizing and tracking single nanoscale emitters in three dimensions with high spatiotemporal resolution using a double-helix point spread function.

Authors:  Michael A Thompson; Matthew D Lew; Majid Badieirostami; W E Moerner
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9.  A general method for improving spatial resolution by optimization of electron multiplication in CCD imaging.

Authors:  Pei-Hsun Wu; Nathaniel Nelson; Yiider Tseng
Journal:  Opt Express       Date:  2010-03-01       Impact factor: 3.894

10.  Optimized localization analysis for single-molecule tracking and super-resolution microscopy.

Authors:  Kim I Mortensen; L Stirling Churchman; James A Spudich; Henrik Flyvbjerg
Journal:  Nat Methods       Date:  2010-04-04       Impact factor: 28.547

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  21 in total

1.  FISHER INFORMATION FOR EMCCD IMAGING WITH APPLICATION TO SINGLE MOLECULE MICROSCOPY.

Authors:  Jerry Chao; E Sally Ward; Raimund J Ober
Journal:  Conf Rec Asilomar Conf Signals Syst Comput       Date:  2010

2.  New results on the single molecule localization problem in two and three dimensions.

Authors:  Amir Tahmasb; E Sally Ward; Raimund J Ober
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-08-09

3.  Localization accuracy in single molecule microscopy using electron-multiplying charge-coupled device cameras.

Authors:  Jerry Chao; E Sally Ward; Raimund J Ober
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2012-03-15

Review 4.  Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking.

Authors:  Lexy von Diezmann; Yoav Shechtman; W E Moerner
Journal:  Chem Rev       Date:  2017-02-02       Impact factor: 60.622

5.  Effect of time discretization of the imaging process on the accuracy of trajectory estimation in fluorescence microscopy.

Authors:  Yau Wong; Jerry Chao; Zhiping Lin; Raimund J Ober
Journal:  Opt Express       Date:  2014-08-25       Impact factor: 3.894

6.  Investigation of the numerics of point spread function integration in single molecule localization.

Authors:  Jerry Chao; Sripad Ram; Taiyoon Lee; E Sally Ward; Raimund J Ober
Journal:  Opt Express       Date:  2015-06-29       Impact factor: 3.894

7.  Determination of localization accuracy based on experimentally acquired image sets: applications to single molecule microscopy.

Authors:  Amir Tahmasbi; E Sally Ward; Raimund J Ober
Journal:  Opt Express       Date:  2015-03-23       Impact factor: 3.894

8.  Effect of Pixelation on the Parameter Estimation of Single Molecule Trajectories.

Authors:  Milad R Vahid; Bernard Hanzon; Raimund J Ober
Journal:  IEEE Trans Comput Imaging       Date:  2020-11-23

9.  A Theoretical High-Density Nanoscopy Study Leads to the Design of UNLOC, a Parameter-free Algorithm.

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Journal:  Biophys J       Date:  2018-07-05       Impact factor: 4.033

10.  Fisher information theory for parameter estimation in single molecule microscopy: tutorial.

Authors:  Jerry Chao; E Sally Ward; Raimund J Ober
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2016-07-01       Impact factor: 2.129

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