Literature DB >> 26392674

New results on the single molecule localization problem in two and three dimensions.

Amir Tahmasb1, E Sally Ward2, Raimund J Ober1.   

Abstract

Fluorescence microscopy is an optical microscopy technique which has been extensively used to study specifically- labeled subcellular objects, such as proteins, and their functions. The best possible accuracy with which an object of interest can be localized when imaged using a fluorescence microscope is typically calculated using the Cramer- Rao lower bound (CRLB). The calculation of the CRLB, however, so far relied on an analytical expression for the image of the object. This can pose challenges in practice since it is often difficult to find appropriate analytical models for the images of general objects. Even if an appropriate analytical model is available, the lack of knowledge about the precise values of imaging parameters might also impose difficulties in the calculation oxf the CRLB. To address these challenges, we have developed an approach that directly uses an experimentally collected image set to calculate the best possible localization accuracy for a general subcellular object in two and three dimensions. In this approach, we fit smoothly connected piecewise polynomials, known as splines, to the experimentally collected image set to provide a continuous model of the object. This continuous model can then be used for the calculation of the best possible localization accuracy.

Entities:  

Keywords:  Cramér-Rao lower bound; Fisher information matrix; single molecule microscopy; splines

Year:  2015        PMID: 26392674      PMCID: PMC4573572          DOI: 10.1117/12.2192008

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  16 in total

1.  Localization accuracy in single-molecule microscopy.

Authors:  Raimund J Ober; Sripad Ram; E Sally Ward
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

2.  Noise suppression of point spread functions and its influence on deconvolution of three-dimensional fluorescence microscopy image sets.

Authors:  X Lai; Zhiping Lin; E S Ward; R J Ober
Journal:  J Microsc       Date:  2005-01       Impact factor: 1.758

3.  Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy.

Authors:  S F Gibson; F Lanni
Journal:  J Opt Soc Am A       Date:  1992-01       Impact factor: 2.129

4.  Measurement of the point-spread function of a noisy imaging system.

Authors:  Christopher D Claxton; Richard C Staunton
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2008-01       Impact factor: 2.129

5.  Determination of localization accuracy based on experimentally acquired image sets: applications to single molecule microscopy.

Authors:  Amir Tahmasbi; E Sally Ward; Raimund J Ober
Journal:  Opt Express       Date:  2015-03-23       Impact factor: 3.894

6.  Designing the focal plane spacing for multifocal plane microscopy.

Authors:  Amir Tahmasbi; Sripad Ram; Jerry Chao; Anish V Abraham; Felix W Tang; E Sally Ward; Raimund J Ober
Journal:  Opt Express       Date:  2014-07-14       Impact factor: 3.894

Review 7.  Fluorophore localization algorithms for super-resolution microscopy.

Authors:  Alex Small; Shane Stahlheber
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

8.  Three dimensional single molecule localization using a phase retrieved pupil function.

Authors:  Sheng Liu; Emil B Kromann; Wesley D Krueger; Joerg Bewersdorf; Keith A Lidke
Journal:  Opt Express       Date:  2013-12-02       Impact factor: 3.894

9.  An information-theoretic approach to designing the plane spacing for multifocal plane microscopy.

Authors:  Amir Tahmasbi; Sripad Ram; Jerry Chao; Anish V Abraham; E Sally Ward; Raimund J Ober
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-02-07

10.  Quantitative Aspects of Single Molecule Microscopy.

Authors:  Raimund J Ober; Amir Tahmasbi; Sripad Ram; Zhiping Lin; E Sally Ward
Journal:  IEEE Signal Process Mag       Date:  2015-01       Impact factor: 12.551

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