Literature DB >> 23019594

Alternative RISC assembly: binding and repression of microRNA-mRNA duplexes by human Ago proteins.

Maja M Janas1, Bingbing Wang, Abigail S Harris, Mike Aguiar, Jonathan M Shaffer, Yerramilli V B K Subrahmanyam, Mark A Behlke, Kai W Wucherpfennig, Steven P Gygi, Etienne Gagnon, Carl D Novina.   

Abstract

MicroRNAs (miRNAs) are small noncoding RNAs that post-transcriptionally regulate protein output from the majority of human mRNAs. In contrast to the consensus view that all miRNAs are associated with Argonaute (Ago) proteins, we determine that miRNAs are expressed in a 13-fold excess relative to Agos in HeLa cells and that miRNAs are bound to mRNAs in a sevenfold excess relative to Agos, implying the existence of miRNA-mRNA duplexes not stoichiometrically bound by Agos. We show that all four human Agos can repress miRNA-mRNA duplexes, but only Ago2 can cleave small interfering RNA-mRNA duplexes in vitro. We visualize direct Ago binding to miRNA-mRNA duplexes in live cells using fluorescence lifetime imaging microscopy. In contrast to the consensus view that Agos bind miRNA duplexes, these data demonstrate that Agos can bind and repress miRNA-mRNA duplexes and support a model of catalytic Ago function in translational repression.

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Year:  2012        PMID: 23019594      PMCID: PMC3479394          DOI: 10.1261/rna.035675.112

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  63 in total

Review 1.  Imaging protein-protein interactions using fluorescence resonance energy transfer microscopy.

Authors:  A K Kenworthy
Journal:  Methods       Date:  2001-07       Impact factor: 3.608

2.  Decapping and decay of messenger RNA occur in cytoplasmic processing bodies.

Authors:  Ujwal Sheth; Roy Parker
Journal:  Science       Date:  2003-05-02       Impact factor: 47.728

3.  Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS.

Authors:  Scott A Gerber; John Rush; Olaf Stemman; Marc W Kirschner; Steven P Gygi
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-27       Impact factor: 11.205

4.  Crystal structure of Argonaute and its implications for RISC slicer activity.

Authors:  Ji-Joon Song; Stephanie K Smith; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

5.  Quantitative functions of Argonaute proteins in mammalian development.

Authors:  Dongmei Wang; Zhaojie Zhang; Evan O'Loughlin; Thomas Lee; Stephane Houel; Dónal O'Carroll; Alexander Tarakhovsky; Natalie G Ahn; Rui Yi
Journal:  Genes Dev       Date:  2012-04-01       Impact factor: 11.361

6.  Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing.

Authors:  A Grishok; A E Pasquinelli; D Conte; N Li; S Parrish; I Ha; D L Baillie; A Fire; G Ruvkun; C C Mello
Journal:  Cell       Date:  2001-07-13       Impact factor: 41.582

7.  Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.

Authors:  S M Elbashir; J Harborth; W Lendeckel; A Yalcin; K Weber; T Tuschl
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

8.  The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development.

Authors:  Hervé Vaucheret; Franck Vazquez; Patrice Crété; David P Bartel
Journal:  Genes Dev       Date:  2004-05-06       Impact factor: 11.361

9.  Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs.

Authors:  Gunter Meister; Markus Landthaler; Agnieszka Patkaniowska; Yair Dorsett; Grace Teng; Thomas Tuschl
Journal:  Mol Cell       Date:  2004-07-23       Impact factor: 17.970

10.  Sustained small interfering RNA-mediated human immunodeficiency virus type 1 inhibition in primary macrophages.

Authors:  Erwei Song; Sang-Kyung Lee; Derek M Dykxhoorn; Carl Novina; Dong Zhang; Keith Crawford; Jan Cerny; Phillip A Sharp; Judy Lieberman; N Manjunath; Premlata Shankar
Journal:  J Virol       Date:  2003-07       Impact factor: 5.103

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  63 in total

1.  Biochemical isolation of Argonaute protein complexes by Ago-APP.

Authors:  Judith Hauptmann; Daniel Schraivogel; Astrid Bruckmann; Sudhir Manickavel; Leonhard Jakob; Norbert Eichner; Janina Pfaff; Marc Urban; Stefanie Sprunck; Markus Hafner; Thomas Tuschl; Rainer Deutzmann; Gunter Meister
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

Review 2.  RNA viruses and microRNAs: challenging discoveries for the 21st century.

Authors:  Gokul Swaminathan; Julio Martin-Garcia; Sonia Navas-Martin
Journal:  Physiol Genomics       Date:  2013-09-17       Impact factor: 3.107

3.  MicroRNA dilution during oocyte growth disables the microRNA pathway in mammalian oocytes.

Authors:  Shubhangini Kataruka; Martin Modrak; Veronika Kinterova; Radek Malik; Daniela M Zeitler; Filip Horvat; Jiri Kanka; Gunter Meister; Petr Svoboda
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

4.  RNA-mediated degradation of microRNAs: A widespread viral strategy?

Authors:  Jana McCaskill; Pairoa Praihirunkit; Paul M Sharp; Amy H Buck
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

5.  Resolving Subcellular miRNA Trafficking and Turnover at Single-Molecule Resolution.

Authors:  Sethuramasundaram Pitchiaya; Laurie A Heinicke; Jun I Park; Elizabeth L Cameron; Nils G Walter
Journal:  Cell Rep       Date:  2017-04-18       Impact factor: 9.423

6.  Ebola Virus Produces Discrete Small Noncoding RNAs Independently of the Host MicroRNA Pathway Which Lack RNA Interference Activity in Bat and Human Cells.

Authors:  Abhishek N Prasad; Adam J Ronk; Steven G Widen; Thomas G Wood; Christopher F Basler; Alexander Bukreyev
Journal:  J Virol       Date:  2020-02-28       Impact factor: 5.103

Review 7.  An overview of microRNAs.

Authors:  Scott M Hammond
Journal:  Adv Drug Deliv Rev       Date:  2015-05-12       Impact factor: 15.470

8.  Identification of AGO3-associated miRNAs and computational prediction of their targets in the green alga Chlamydomonas reinhardtii.

Authors:  Adam Voshall; Eun-Jeong Kim; Xinrong Ma; Etsuko N Moriyama; Heriberto Cerutti
Journal:  Genetics       Date:  2015-03-13       Impact factor: 4.562

Review 9.  Exosomal miRNAs: novel players in viral infection.

Authors:  Javid Sadri Nahand; Maryam Mahjoubin-Tehran; Mohsen Moghoofei; Mohammad Hossein Pourhanifeh; Hamid Reza Mirzaei; Zatollah Asemi; Alireza Khatami; Farah Bokharaei-Salim; Hamed Mirzaei; Michael R Hamblin
Journal:  Epigenomics       Date:  2020-02-25       Impact factor: 4.778

10.  Mutational inactivation of herpes simplex virus 1 microRNAs identifies viral mRNA targets and reveals phenotypic effects in culture.

Authors:  Omar Flores; Sanae Nakayama; Adam W Whisnant; Hassan Javanbakht; Bryan R Cullen; David C Bloom
Journal:  J Virol       Date:  2013-03-27       Impact factor: 5.103

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