Literature DB >> 32609824

MicroRNA dilution during oocyte growth disables the microRNA pathway in mammalian oocytes.

Shubhangini Kataruka1, Martin Modrak2, Veronika Kinterova3, Radek Malik1, Daniela M Zeitler4, Filip Horvat1,5, Jiri Kanka3, Gunter Meister4, Petr Svoboda1.   

Abstract

MicroRNAs (miRNAs) are ubiquitous small RNAs guiding post-transcriptional gene repression in countless biological processes. However, the miRNA pathway in mouse oocytes appears inactive and dispensable for development. We propose that marginalization of the miRNA pathway activity stems from the constraints and adaptations of RNA metabolism elicited by the diluting effects of oocyte growth. We report that miRNAs do not accumulate like mRNAs during the oocyte growth because miRNA turnover has not adapted to it. The most abundant miRNAs total tens of thousands of molecules in growing (∅ 40 μm) and fully grown (∅ 80 μm) oocytes, a number similar to that observed in much smaller fibroblasts. The lack of miRNA accumulation results in a 100-fold lower miRNA concentration in fully grown oocytes than in somatic cells. This brings a knock-down-like effect, where diluted miRNAs engage targets but are not abundant enough for significant repression. Low-miRNA concentrations were observed in rat, hamster, porcine and bovine oocytes, arguing that miRNA inactivity is not mouse-specific but a common mammalian oocyte feature. Injection of 250,000 miRNA molecules was sufficient to restore reporter repression in mouse and porcine oocytes, suggesting that miRNA inactivity comes from low-miRNA abundance and not from some suppressor of the pathway.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2020        PMID: 32609824      PMCID: PMC7430632          DOI: 10.1093/nar/gkaa543

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  72 in total

1.  MicroRNA-directed cleavage of HOXB8 mRNA.

Authors:  Soraya Yekta; I-Hung Shih; David P Bartel
Journal:  Science       Date:  2004-04-23       Impact factor: 47.728

2.  DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal.

Authors:  Yangming Wang; Rostislav Medvid; Collin Melton; Rudolf Jaenisch; Robert Blelloch
Journal:  Nat Genet       Date:  2007-01-28       Impact factor: 38.330

3.  Piwi proteins and piRNAs in mammalian oocytes and early embryos.

Authors:  Elke F Roovers; David Rosenkranz; Mahdi Mahdipour; Chung-Ting Han; Nannan He; Susana M Chuva de Sousa Lopes; Lucette A J van der Westerlaken; Hans Zischler; Falk Butter; Bernard A J Roelen; René F Ketting
Journal:  Cell Rep       Date:  2015-03-26       Impact factor: 9.423

4.  Let-7 represses Nr6a1 and a mid-gestation developmental program in adult fibroblasts.

Authors:  Allan M Gurtan; Arvind Ravi; Peter B Rahl; Andrew D Bosson; Courtney K JnBaptiste; Arjun Bhutkar; Charles A Whittaker; Richard A Young; Phillip A Sharp
Journal:  Genes Dev       Date:  2013-04-15       Impact factor: 11.361

Review 5.  Assembly and function of small RNA - argonaute protein complexes.

Authors:  Anne Dueck; Gunter Meister
Journal:  Biol Chem       Date:  2014-06       Impact factor: 3.915

6.  Biochemical studies of mammalian oogenesis: synthesis and stability of various classes of RNA during growth of the mouse oocyte in vitro.

Authors:  P T Brower; E Gizang; S M Boreen; R M Schultz
Journal:  Dev Biol       Date:  1981-09       Impact factor: 3.582

7.  MicroRNA activity is suppressed in mouse oocytes.

Authors:  Jun Ma; Matyas Flemr; Paula Stein; Philipp Berninger; Radek Malik; Mihaela Zavolan; Petr Svoboda; Richard M Schultz
Journal:  Curr Biol       Date:  2010-01-28       Impact factor: 10.834

8.  EXOSC10 sculpts the transcriptome during the growth-to-maturation transition in mouse oocytes.

Authors:  Di Wu; Jurrien Dean
Journal:  Nucleic Acids Res       Date:  2020-06-04       Impact factor: 16.971

9.  Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.

Authors:  Lee P Lim; Nelson C Lau; Philip Garrett-Engele; Andrew Grimson; Janell M Schelter; John Castle; David P Bartel; Peter S Linsley; Jason M Johnson
Journal:  Nature       Date:  2005-01-30       Impact factor: 49.962

10.  An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo.

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Journal:  Sci Rep       Date:  2019-09-16       Impact factor: 4.379

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  5 in total

Review 1.  Why Is It So Difficult To Have Competent Oocytes from In vitro Cultured Preantral Follicles?

Authors:  Laís R F M Paulino; Ernando I T de Assis; Venância A N Azevedo; Bianca R Silva; Ellen V da Cunha; José R V Silva
Journal:  Reprod Sci       Date:  2022-01-27       Impact factor: 3.060

2.  ncRNA BC1 influences translation in the oocyte.

Authors:  D Aleshkina; R Iyyappan; Ch J Lin; T Masek; M Pospisek; A Susor
Journal:  RNA Biol       Date:  2021-02-08       Impact factor: 4.652

Review 3.  Reexamining assumptions about miRNA-guided gene silencing.

Authors:  Audrius Kilikevicius; Gunter Meister; David R Corey
Journal:  Nucleic Acids Res       Date:  2022-01-25       Impact factor: 16.971

4.  Physiologically relevant miRNAs in mammalian oocytes are rare and highly abundant.

Authors:  Shubhangini Kataruka; Veronika Kinterova; Filip Horvat; Marcos Iuri Roos Kulmann; Jiri Kanka; Petr Svoboda
Journal:  EMBO Rep       Date:  2021-12-06       Impact factor: 8.807

5.  Small RNA expression and miRNA modification dynamics in human oocytes and early embryos.

Authors:  Pauliina Paloviita; Christel Hydén-Granskog; Dawit A Yohannes; Priit Paluoja; Juha Kere; Juha S Tapanainen; Kaarel Krjutškov; Timo Tuuri; Urmo Võsa; Sanna Vuoristo
Journal:  Genome Res       Date:  2021-08       Impact factor: 9.043

  5 in total

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