Literature DB >> 12730603

Decapping and decay of messenger RNA occur in cytoplasmic processing bodies.

Ujwal Sheth1, Roy Parker.   

Abstract

A major pathway of eukaryotic messenger RNA (mRNA) turnover begins with deadenylation, followed by decapping and 5' to 3' exonucleolytic decay. We provide evidence that mRNA decapping and 5' to 3' degradation occur in discrete cytoplasmic foci in yeast, which we call processing bodies (P bodies). First, proteins that activate or catalyze decapping are concentrated in P bodies. Second, inhibiting mRNA turnover before decapping leads to loss of P bodies; however, inhibiting turnover at, or after, decapping, increases the abundance and size of P bodies. Finally, mRNA degradation intermediates are localized to P bodies. These results define the flux of mRNAs between polysomes and P bodies as a critical aspect of cytoplasmic mRNA metabolism and a possible site for regulation of mRNA degradation.

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Year:  2003        PMID: 12730603      PMCID: PMC1876714          DOI: 10.1126/science.1082320

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  31 in total

1.  Evidence that ternary complex (eIF2-GTP-tRNA(i)(Met))-deficient preinitiation complexes are core constituents of mammalian stress granules.

Authors:  Nancy Kedersha; Samantha Chen; Natalie Gilks; Wei Li; Ira J Miller; Joachim Stahl; Paul Anderson
Journal:  Mol Biol Cell       Date:  2002-01       Impact factor: 4.138

2.  Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay.

Authors:  Jens Lykke-Andersen
Journal:  Mol Cell Biol       Date:  2002-12       Impact factor: 4.272

3.  Two distinct destabilizing elements in the c-fos message trigger deadenylation as a first step in rapid mRNA decay.

Authors:  A B Shyu; J G Belasco; M E Greenberg
Journal:  Genes Dev       Date:  1991-02       Impact factor: 11.361

4.  Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures.

Authors:  Erwin van Dijk; Nicolas Cougot; Sylke Meyer; Sylvie Babajko; Elmar Wahle; Bertrand Séraphin
Journal:  EMBO J       Date:  2002-12-16       Impact factor: 11.598

5.  A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation.

Authors:  C J Decker; R Parker
Journal:  Genes Dev       Date:  1993-08       Impact factor: 11.361

6.  The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes.

Authors:  J M Coller; M Tucker; U Sheth; M A Valencia-Sanchez; R Parker
Journal:  RNA       Date:  2001-12       Impact factor: 4.942

7.  Yeast cells lacking 5'-->3' exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5' cap structure.

Authors:  C L Hsu; A Stevens
Journal:  Mol Cell Biol       Date:  1993-08       Impact factor: 4.272

8.  Mutations affecting stability and deadenylation of the yeast MFA2 transcript.

Authors:  D Muhlrad; R Parker
Journal:  Genes Dev       Date:  1992-11       Impact factor: 11.361

9.  The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci.

Authors:  Dierk Ingelfinger; Donna J Arndt-Jovin; Reinhard Lührmann; Tilmann Achsel
Journal:  RNA       Date:  2002-12       Impact factor: 4.942

10.  Stressful initiations.

Authors:  Paul Anderson; Nancy Kedersha
Journal:  J Cell Sci       Date:  2002-08-15       Impact factor: 5.285

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  584 in total

Review 1.  Oxidative damage to RNA in aging and neurodegenerative disorders.

Authors:  Akihiko Nunomura; Paula I Moreira; Rudy J Castellani; Hyoung-Gon Lee; Xiongwei Zhu; Mark A Smith; George Perry
Journal:  Neurotox Res       Date:  2012-06-06       Impact factor: 3.911

Review 2.  TDP-43 aggregation in neurodegeneration: are stress granules the key?

Authors:  Colleen M Dewey; Basar Cenik; Chantelle F Sephton; Brett A Johnson; Joachim Herz; Gang Yu
Journal:  Brain Res       Date:  2012-02-22       Impact factor: 3.252

3.  A role for the exosome in the in vivo degradation of unstable mRNAs.

Authors:  Simon Haile; Antonio M Estevez; Christine Clayton
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

4.  Evidence that poly(A) binding protein has an evolutionarily conserved function in facilitating mRNA biogenesis and export.

Authors:  Julia A Chekanova; Dmitry A Belostotsky
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

5.  An essential role for the Saccharomyces cerevisiae DEAD-box helicase DHH1 in G1/S DNA-damage checkpoint recovery.

Authors:  Megan Bergkessel; Joseph C Reese
Journal:  Genetics       Date:  2004-05       Impact factor: 4.562

6.  Loss of translational control in yeast compromised for the major mRNA decay pathway.

Authors:  L E A Holmes; S G Campbell; S K De Long; A B Sachs; M P Ashe
Journal:  Mol Cell Biol       Date:  2004-04       Impact factor: 4.272

7.  The active form of Xp54 RNA helicase in translational repression is an RNA-mediated oligomer.

Authors:  Nicola Minshall; Nancy Standart
Journal:  Nucleic Acids Res       Date:  2004-02-24       Impact factor: 16.971

Review 8.  Effects of stress and aging on ribonucleoprotein assembly and function in the germ line.

Authors:  Jennifer A Schisa
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-11-13       Impact factor: 9.957

9.  Processing-body movement in Arabidopsis depends on an interaction between myosins and DECAPPING PROTEIN1.

Authors:  Alexandra Steffens; Benjamin Jaegle; Achim Tresch; Martin Hülskamp; Marc Jakoby
Journal:  Plant Physiol       Date:  2014-02-13       Impact factor: 8.340

10.  The conserved P body component HPat/Pat1 negatively regulates synaptic terminal growth at the larval Drosophila neuromuscular junction.

Authors:  Sarala J Pradhan; Katherine R Nesler; Sarah F Rosen; Yasuko Kato; Akira Nakamura; Mani Ramaswami; Scott A Barbee
Journal:  J Cell Sci       Date:  2012-10-24       Impact factor: 5.285

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