Literature DB >> 23007845

Robustness of signal transduction pathways.

Nils Blüthgen1, Stefan Legewie.   

Abstract

Signal transduction pathways transduce information about the outside of the cell to the nucleus, regulating gene expression and cell fate. To reliably inform the cell about its surroundings, information transfer has to be robust against typical perturbation that a cell experiences. Robustness of several mammalian signaling pathways has been studied recently by quantitative experimentation and using mathematical modeling. Here, we review these studies, and describe the emerging concepts of robustness and the underlying mechanisms.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23007845     DOI: 10.1007/s00018-012-1162-7

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  77 in total

1.  Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades.

Authors:  B N Kholodenko
Journal:  Eur J Biochem       Date:  2000-03

2.  Design principles of a bacterial signalling network.

Authors:  Markus Kollmann; Linda Løvdok; Kilian Bartholomé; Jens Timmer; Victor Sourjik
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

3.  Untangling the wires: a strategy to trace functional interactions in signaling and gene networks.

Authors:  Boris N Kholodenko; Anatoly Kiyatkin; Frank J Bruggeman; Eduardo Sontag; Hans V Westerhoff; Jan B Hoek
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-19       Impact factor: 11.205

4.  Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood.

Authors:  A Raue; C Kreutz; T Maiwald; J Bachmann; M Schilling; U Klingmüller; J Timmer
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

5.  A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts.

Authors:  Nils Blüthgen; Stefan Legewie; Szymon M Kielbasa; Anja Schramme; Oleg Tchernitsa; Jana Keil; Andrea Solf; Martin Vingron; Reinhold Schäfer; Hanspeter Herzel; Christine Sers
Journal:  FEBS J       Date:  2009-01-12       Impact factor: 5.542

6.  A linear steady-state treatment of enzymatic chains. General properties, control and effector strength.

Authors:  R Heinrich; T A Rapoport
Journal:  Eur J Biochem       Date:  1974-02-15

7.  A systems-level analysis of perfect adaptation in yeast osmoregulation.

Authors:  Dale Muzzey; Carlos A Gómez-Uribe; Jerome T Mettetal; Alexander van Oudenaarden
Journal:  Cell       Date:  2009-07-10       Impact factor: 41.582

8.  Bmp-4 acts as a morphogen in dorsoventral mesoderm patterning in Xenopus.

Authors:  R Dosch; V Gawantka; H Delius; C Blumenstock; C Niehrs
Journal:  Development       Date:  1997-06       Impact factor: 6.868

Review 9.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

10.  Role of translational coupling in robustness of bacterial chemotaxis pathway.

Authors:  Linda Løvdok; Kajetan Bentele; Nikita Vladimirov; Anette Müller; Ferencz S Pop; Dirk Lebiedz; Markus Kollmann; Victor Sourjik
Journal:  PLoS Biol       Date:  2009-08-18       Impact factor: 8.029

View more
  12 in total

Review 1.  MAP kinase modules: the excursion model and the steps that count.

Authors:  Alexander T Piala; John M Humphreys; Elizabeth J Goldsmith
Journal:  Biophys J       Date:  2014-11-04       Impact factor: 4.033

2.  Transient absolute robustness in stochastic biochemical networks.

Authors:  German A Enciso
Journal:  J R Soc Interface       Date:  2016-08       Impact factor: 4.118

3.  Exon Definition Facilitates Reliable Control of Alternative Splicing in the RON Proto-Oncogene.

Authors:  Mihaela Enculescu; Simon Braun; Samarth Thonta Setty; Anke Busch; Kathi Zarnack; Julian König; Stefan Legewie
Journal:  Biophys J       Date:  2020-03-03       Impact factor: 4.033

4.  Quantitative Analysis of Robustness of Dynamic Response and Signal Transfer in Insulin mediated PI3K/AKT Pathway.

Authors:  Shibin Mathew; Ipsita Banerjee
Journal:  Comput Chem Eng       Date:  2014-12-04       Impact factor: 3.845

Review 5.  Patterning principles of morphogen gradients.

Authors:  M Fethullah Simsek; Ertuğrul M Özbudak
Journal:  Open Biol       Date:  2022-10-19       Impact factor: 7.124

6.  Tunneling nanotubes mediate the expression of senescence markers in mesenchymal stem/stromal cell spheroids.

Authors:  Jacklyn Whitehead; Jiali Zhang; Jenna N Harvestine; Alefia Kothambawala; Gang-Yu Liu; J Kent Leach
Journal:  Stem Cells       Date:  2019-08-01       Impact factor: 6.277

7.  A multi-scale model of hepcidin promoter regulation reveals factors controlling systemic iron homeostasis.

Authors:  Guillem Casanovas; Anashua Banerji; Flavia d'Alessio; Martina U Muckenthaler; Stefan Legewie
Journal:  PLoS Comput Biol       Date:  2014-01-02       Impact factor: 4.475

8.  Data-derived modeling characterizes plasticity of MAPK signaling in melanoma.

Authors:  Marti Bernardo-Faura; Stefan Massen; Christine S Falk; Nathan R Brady; Roland Eils
Journal:  PLoS Comput Biol       Date:  2014-09-04       Impact factor: 4.475

9.  Dynamics robustness of cascading systems.

Authors:  Jonathan T Young; Tetsuhiro S Hatakeyama; Kunihiko Kaneko
Journal:  PLoS Comput Biol       Date:  2017-03-13       Impact factor: 4.475

10.  Dynamics and robustness of the cardiac progenitor cell induced pluripotent stem cell network during cell phenotypes transition.

Authors:  Yuangen Yao; Chengzhang Ma; Haiyou Deng; Quan Liu; Wei Cao; Rong Gui; Tianquan Feng; Ming Yi
Journal:  IET Syst Biol       Date:  2017-02       Impact factor: 1.615

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.