Literature DB >> 19596242

A systems-level analysis of perfect adaptation in yeast osmoregulation.

Dale Muzzey1, Carlos A Gómez-Uribe, Jerome T Mettetal, Alexander van Oudenaarden.   

Abstract

Negative feedback can serve many different cellular functions, including noise reduction in transcriptional networks and the creation of circadian oscillations. However, only one special type of negative feedback ("integral feedback") ensures perfect adaptation, where steady-state output is independent of steady-state input. Here we quantitatively measure single-cell dynamics in the Saccharomyces cerevisiae hyperosmotic shock network, which regulates membrane turgor pressure. Importantly, we find that the nuclear enrichment of the MAP kinase Hog1 perfectly adapts to changes in external osmolarity, a feature robust to signaling fidelity and operating with very low noise. By monitoring multiple system quantities (e.g., cell volume, Hog1, glycerol) and using varied input waveforms (e.g., steps and ramps), we assess in a minimally invasive manner the network location of the mechanism responsible for perfect adaptation. We conclude that the system contains only one effective integrating mechanism, which requires Hog1 kinase activity and regulates glycerol synthesis but not leakage.

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Year:  2009        PMID: 19596242      PMCID: PMC3109981          DOI: 10.1016/j.cell.2009.04.047

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  29 in total

Review 1.  Robustness of cellular functions.

Authors:  Jörg Stelling; Uwe Sauer; Zoltan Szallasi; Francis J Doyle; John Doyle
Journal:  Cell       Date:  2004-09-17       Impact factor: 41.582

2.  Integrative model of the response of yeast to osmotic shock.

Authors:  Edda Klipp; Bodil Nordlander; Roland Krüger; Peter Gennemark; Stefan Hohmann
Journal:  Nat Biotechnol       Date:  2005-07-17       Impact factor: 54.908

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Authors:  N Barkai; S Leibler
Journal:  Nature       Date:  1997-06-26       Impact factor: 49.962

4.  Osmotic significance of glycerol accumulation in exponentially growing yeasts.

Authors:  R H Reed; J A Chudek; R Foster; G M Gadd
Journal:  Appl Environ Microbiol       Date:  1987-09       Impact factor: 4.792

Review 5.  Principles of MAP kinase signaling specificity in Saccharomyces cerevisiae.

Authors:  Monica A Schwartz; Hiten D Madhani
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

6.  Unique and redundant roles for HOG MAPK pathway components as revealed by whole-genome expression analysis.

Authors:  Sean M O'Rourke; Ira Herskowitz
Journal:  Mol Biol Cell       Date:  2003-10-31       Impact factor: 4.138

7.  Studies on the function of yeast phosphofructokinase subunits by in vitro mutagenesis.

Authors:  A Arvanitidis; J J Heinisch
Journal:  J Biol Chem       Date:  1994-03-25       Impact factor: 5.157

8.  Regulated nucleo/cytoplasmic exchange of HOG1 MAPK requires the importin beta homologs NMD5 and XPO1.

Authors:  P Ferrigno; F Posas; D Koepp; H Saito; P A Silver
Journal:  EMBO J       Date:  1998-10-01       Impact factor: 11.598

9.  High osmolarity glycerol (HOG) pathway-induced phosphorylation and activation of 6-phosphofructo-2-kinase are essential for glycerol accumulation and yeast cell proliferation under hyperosmotic stress.

Authors:  Hassan Dihazi; Renate Kessler; Klaus Eschrich
Journal:  J Biol Chem       Date:  2004-03-22       Impact factor: 5.157

10.  Fps1, a yeast member of the MIP family of channel proteins, is a facilitator for glycerol uptake and efflux and is inactive under osmotic stress.

Authors:  K Luyten; J Albertyn; W F Skibbe; B A Prior; J Ramos; J M Thevelein; S Hohmann
Journal:  EMBO J       Date:  1995-04-03       Impact factor: 11.598

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  148 in total

Review 1.  Controlling gene expression in response to stress.

Authors:  Eulàlia de Nadal; Gustav Ammerer; Francesc Posas
Journal:  Nat Rev Genet       Date:  2011-11-03       Impact factor: 53.242

2.  Adaptation in a eukaryotic pathway: combining experiments with modeling.

Authors:  Wouter-Jan Rappel; Richard A Firtel
Journal:  Cell Cycle       Date:  2012-03-15       Impact factor: 4.534

3.  Diverse sensitivity thresholds in dynamic signaling responses by social amoebae.

Authors:  C Joanne Wang; Adriel Bergmann; Benjamin Lin; Kyuri Kim; Andre Levchenko
Journal:  Sci Signal       Date:  2012-02-28       Impact factor: 8.192

4.  Dynamic processes at stress promoters regulate the bimodal expression of HOG response genes.

Authors:  Serge Pelet; Matthias Peter
Journal:  Commun Integr Biol       Date:  2011-11-01

5.  Sensitivity control through attenuation of signal transfer efficiency by negative regulation of cellular signalling.

Authors:  Yu Toyoshima; Hiroaki Kakuda; Kazuhiro A Fujita; Shinsuke Uda; Shinya Kuroda
Journal:  Nat Commun       Date:  2012-03-13       Impact factor: 14.919

6.  Deconvolution of dynamic mechanical networks.

Authors:  Michael Hinczewski; Yann von Hansen; Roland R Netz
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-30       Impact factor: 11.205

7.  Computing the structural influence matrix for biological systems.

Authors:  Giulia Giordano; Christian Cuba Samaniego; Elisa Franco; Franco Blanchini
Journal:  J Math Biol       Date:  2015-09-22       Impact factor: 2.259

8.  Information processing in the adaptation of Saccharomyces cerevisiae to osmotic stress: an analysis of the phosphorelay system.

Authors:  Friedemann Uschner; Edda Klipp
Journal:  Syst Synth Biol       Date:  2014-04-19

9.  Rapid hyperosmotic-induced Ca2+ responses in Arabidopsis thaliana exhibit sensory potentiation and involvement of plastidial KEA transporters.

Authors:  Aaron B Stephan; Hans-Henning Kunz; Eric Yang; Julian I Schroeder
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-15       Impact factor: 11.205

10.  Network Topologies That Can Achieve Dual Function of Adaptation and Noise Attenuation.

Authors:  Lingxia Qiao; Wei Zhao; Chao Tang; Qing Nie; Lei Zhang
Journal:  Cell Syst       Date:  2019-09-18       Impact factor: 10.304

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