Literature DB >> 16306993

Design principles of a bacterial signalling network.

Markus Kollmann1, Linda Løvdok, Kilian Bartholomé, Jens Timmer, Victor Sourjik.   

Abstract

Cellular biochemical networks have to function in a noisy environment using imperfect components. In particular, networks involved in gene regulation or signal transduction allow only for small output tolerances, and the underlying network structures can be expected to have undergone evolution for inherent robustness against perturbations. Here we combine theoretical and experimental analyses to investigate an optimal design for the signalling network of bacterial chemotaxis, one of the most thoroughly studied signalling networks in biology. We experimentally determine the extent of intercellular variations in the expression levels of chemotaxis proteins and use computer simulations to quantify the robustness of several hypothetical chemotaxis pathway topologies to such gene expression noise. We demonstrate that among these topologies the experimentally established chemotaxis network of Escherichia coli has the smallest sufficiently robust network structure, allowing accurate chemotactic response for almost all individuals within a population. Our results suggest that this pathway has evolved to show an optimal chemotactic performance while minimizing the cost of resources associated with high levels of protein expression. Moreover, the underlying topological design principles compensating for intercellular variations seem to be highly conserved among bacterial chemosensory systems.

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Year:  2005        PMID: 16306993     DOI: 10.1038/nature04228

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  132 in total

Review 1.  Microfluidic technologies for temporal perturbations of chemotaxis.

Authors:  Daniel Irimia
Journal:  Annu Rev Biomed Eng       Date:  2010-08-15       Impact factor: 9.590

2.  A general mechanism for network-dosage compensation in gene circuits.

Authors:  Murat Acar; Bernardo F Pando; Frances H Arnold; Michael B Elowitz; Alexander van Oudenaarden
Journal:  Science       Date:  2010-09-24       Impact factor: 47.728

Review 3.  Responding to chemical gradients: bacterial chemotaxis.

Authors:  Victor Sourjik; Ned S Wingreen
Journal:  Curr Opin Cell Biol       Date:  2011-12-09       Impact factor: 8.382

Review 4.  Error prevention and mitigation as forces in the evolution of genes and genomes.

Authors:  Tobias Warnecke; Laurence D Hurst
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

5.  Identifying sources of variation and the flow of information in biochemical networks.

Authors:  Clive G Bowsher; Peter S Swain
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-23       Impact factor: 11.205

6.  A computational approach to increase time scales in Brownian dynamics-based reaction-diffusion modeling.

Authors:  Zachary Frazier; Frank Alber
Journal:  J Comput Biol       Date:  2012-06       Impact factor: 1.479

Review 7.  Spatial organization in bacterial chemotaxis.

Authors:  Victor Sourjik; Judith P Armitage
Journal:  EMBO J       Date:  2010-08-18       Impact factor: 11.598

8.  Bacteria determine fate by playing dice with controlled odds.

Authors:  Eshel Ben-Jacob; Daniel Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-21       Impact factor: 11.205

9.  Biological role of noise encoded in a genetic network motif.

Authors:  Mark Kittisopikul; Gürol M Süel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-28       Impact factor: 11.205

10.  Fundamental constraints on the abundances of chemotaxis proteins.

Authors:  Anne-Florence Bitbol; Ned S Wingreen
Journal:  Biophys J       Date:  2015-03-10       Impact factor: 4.033

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