Literature DB >> 25506104

Quantitative Analysis of Robustness of Dynamic Response and Signal Transfer in Insulin mediated PI3K/AKT Pathway.

Shibin Mathew1, Ipsita Banerjee2.   

Abstract

Robustness is a critical feature of signaling pathways ensuring signal propagation with high fidelity in the event of perturbations. Here we present a detailed quantitative analysis of robustness in insulin mediated PI3K/AKT pathway, a critical signaling pathway maintaining self-renewal in human embryonic stem cells. Using global sensitivity analysis, we identified robustness promoting mechanisms that ensure (1) maintenance of a first order or overshoot dynamics of self-renewal molecule, p-AKT and (2) robust transfer of signals from oscillatory insulin stimulus to p-AKT in the presence of noise. Our results indicate that negative feedback controls the robustness to most perturbations. Faithful transfer of signal from the stimulating ligand to p-AKT occurs even in the presence of noise, albeit with signal attenuation and high frequency cut-off. Negative feedback contributes to signal attenuation, while positive regulators upstream of PIP3 contribute to signal amplification. These results establish precise mechanisms to modulate self-renewal molecules like p-AKT.

Entities:  

Keywords:  Global sensitivity analysis; PI3K/AKT pathway; Robust dynamics; Self-renewal; Signal transfer efficiency

Year:  2014        PMID: 25506104      PMCID: PMC4261235          DOI: 10.1016/j.compchemeng.2014.07.018

Source DB:  PubMed          Journal:  Comput Chem Eng        ISSN: 0098-1354            Impact factor:   3.845


  53 in total

1.  High-throughput screening assay for the identification of compounds regulating self-renewal and differentiation in human embryonic stem cells.

Authors:  Sabrina C Desbordes; Dimitris G Placantonakis; Anthony Ciro; Nicholas D Socci; Gabsang Lee; Hakim Djaballah; Lorenz Studer
Journal:  Cell Stem Cell       Date:  2008-06-05       Impact factor: 24.633

2.  Defined, feeder-independent medium for human embryonic stem cell culture.

Authors:  Tenneille Ludwig; James A Thomson
Journal:  Curr Protoc Stem Cell Biol       Date:  2007-09

3.  The dynamics of signaling as a pharmacological target.

Authors:  Marcelo Behar; Derren Barken; Shannon L Werner; Alexander Hoffmann
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

4.  Signaling network crosstalk in human pluripotent cells: a Smad2/3-regulated switch that controls the balance between self-renewal and differentiation.

Authors:  Amar M Singh; David Reynolds; Timothy Cliff; Satoshi Ohtsuka; Alexa L Mattheyses; Yuhua Sun; Laura Menendez; Michael Kulik; Stephen Dalton
Journal:  Cell Stem Cell       Date:  2012-03-02       Impact factor: 24.633

Review 5.  Signalling by protein phosphatases and drug development: a systems-centred view.

Authors:  Lan K Nguyen; David Matallanas; David R Croucher; Alexander von Kriegsheim; Boris N Kholodenko
Journal:  FEBS J       Date:  2012-03-14       Impact factor: 5.542

6.  Hydrogen peroxide generated during cellular insulin stimulation is integral to activation of the distal insulin signaling cascade in 3T3-L1 adipocytes.

Authors:  K Mahadev; X Wu; A Zilbering; L Zhu; J T Lawrence; B J Goldstein
Journal:  J Biol Chem       Date:  2001-10-11       Impact factor: 5.157

Review 7.  Matrigel: basement membrane matrix with biological activity.

Authors:  Hynda K Kleinman; George R Martin
Journal:  Semin Cancer Biol       Date:  2005-10       Impact factor: 15.707

8.  Biological robustness: paradigms, mechanisms, and systems principles.

Authors:  James Michael Whitacre
Journal:  Front Genet       Date:  2012-05-11       Impact factor: 4.599

9.  A general computational method for robustness analysis with applications to synthetic gene networks.

Authors:  Aurélien Rizk; Gregory Batt; François Fages; Sylvain Soliman
Journal:  Bioinformatics       Date:  2009-06-15       Impact factor: 6.937

10.  A steady state analysis indicates that negative feedback regulation of PTP1B by Akt elicits bistability in insulin-stimulated GLUT4 translocation.

Authors:  Lopamudra Giri; Vivek K Mutalik; K V Venkatesh
Journal:  Theor Biol Med Model       Date:  2004-08-03       Impact factor: 2.432

View more
  5 in total

1.  Crosstalk in transition: the translocation of Akt.

Authors:  Catheryn W Gray; Adelle C F Coster
Journal:  J Math Biol       Date:  2018-10-09       Impact factor: 2.259

2.  ZiBu PiYin recipe prevents diabetes-associated cognitive decline in rats: possible involvement of ameliorating mitochondrial dysfunction, insulin resistance pathway and histopathological changes.

Authors:  Zheng Sun; Libin Zhan; Lina Liang; Hua Sui; Luping Zheng; Xiaoxin Sun; Wei Xie
Journal:  BMC Complement Altern Med       Date:  2016-07-08       Impact factor: 3.659

Review 3.  PI3K in stemness regulation: from development to cancer.

Authors:  Ralitsa R Madsen
Journal:  Biochem Soc Trans       Date:  2020-02-28       Impact factor: 5.407

4.  VEGFR1 promotes cell migration and proliferation through PLCγ and PI3K pathways.

Authors:  Jared C Weddell; Si Chen; P I Imoukhuede
Journal:  NPJ Syst Biol Appl       Date:  2017-12-19

5.  Effect of the ZiBuPiYin Recipe on Diabetes-Associated Cognitive Decline in Zucker Diabetic Fatty Rats After Chronic Psychological Stress.

Authors:  Tingting Bi; Libin Zhan; Wen Zhou; Hua Sui
Journal:  Front Psychiatry       Date:  2020-04-21       Impact factor: 4.157

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.