Literature DB >> 23062349

Dynamics of protein and its hydration water: neutron scattering studies on fully deuterated GFP.

Jonathan D Nickels1, Hugh O'Neill, Liang Hong, Madhusudan Tyagi, Georg Ehlers, Kevin L Weiss, Qiu Zhang, Zheng Yi, Eugene Mamontov, Jeremy C Smith, Alexei P Sokolov.   

Abstract

We present a detailed analysis of the picosecond-to-nanosecond motions of green fluorescent protein (GFP) and its hydration water using neutron scattering spectroscopy and hydrogen/deuterium contrast. The analysis reveals that hydration water suppresses protein motions at lower temperatures (<~ 200 K), and facilitates protein dynamics at high temperatures. Experimental data demonstrate that the hydration water is harmonic at temperatures <~ 180-190 K and is not affected by the proteins' methyl group rotations. The dynamics of the hydration water exhibits changes at ~ 180-190 K that we ascribe to the glass transition in the hydrated protein. Our results confirm significant differences in the dynamics of protein and its hydration water at high temperatures: on the picosecond-to-nanosecond timescale, the hydration water exhibits diffusive dynamics, while the protein motions are localized to <~3 Å. The diffusion of the GFP hydration water is similar to the behavior of hydration water previously observed for other proteins. Comparison with other globular proteins (e.g., lysozyme) reveals that on the timescale of 1 ns and at equivalent hydration level, GFP dynamics (mean-square displacements and quasielastic intensity) are of much smaller amplitude. Moreover, the suppression of the protein dynamics by the hydration water at low temperatures appears to be stronger in GFP than in other globular proteins. We ascribe this observation to the barrellike structure of GFP.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23062349      PMCID: PMC3471459          DOI: 10.1016/j.bpj.2012.08.046

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  53 in total

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2.  Static and pulsed field gradient nuclear magnetic resonance studies of water diffusion in protein matrices.

Authors:  M Rosenstihl; M Vogel
Journal:  J Chem Phys       Date:  2011-10-28       Impact factor: 3.488

3.  Dynamic instability of liquidlike motions in a globular protein observed by inelastic neutron scattering.

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Journal:  Phys Rev Lett       Date:  1990-08-20       Impact factor: 9.161

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Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

5.  A unified model of protein dynamics.

Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

6.  Dynamics of tRNA at different levels of hydration.

Authors:  J H Roh; R M Briber; A Damjanovic; D Thirumalai; S A Woodson; A P Sokolov
Journal:  Biophys J       Date:  2009-04-08       Impact factor: 4.033

7.  Role of methyl groups in dynamics and evolution of biomolecules.

Authors:  Jonathan D Nickels; Joseph E Curtis; Hugh O'Neill; Alexei P Sokolov
Journal:  J Biol Phys       Date:  2012-04-14       Impact factor: 1.365

8.  Direct evidence of the amino acid side chain and backbone contributions to protein anharmonicity.

Authors:  Giorgio Schiró; Chiara Caronna; Francesca Natali; Antonio Cupane
Journal:  J Am Chem Soc       Date:  2010-02-03       Impact factor: 15.419

9.  Structural fluctuations in glass-forming liquids: Mössbauer spectroscopy on iron in glycerol.

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Journal:  Phys Rev B Condens Matter       Date:  1991-02-01

10.  The molecular structure of green fluorescent protein.

Authors:  F Yang; L G Moss; G N Phillips
Journal:  Nat Biotechnol       Date:  1996-10       Impact factor: 54.908

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  23 in total

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Authors:  Utsab R Shrestha; Debsindhu Bhowmik; John R D Copley; Madhusudan Tyagi; Juscelino B Leão; Xiang-qiang Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

2.  Coherent neutron scattering and collective dynamics in the protein, GFP.

Authors:  Jonathan D Nickels; Stefania Perticaroli; Hugh O'Neill; Qiu Zhang; Georg Ehlers; Alexei P Sokolov
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

3.  Dynamics of a family of cyan fluorescent proteins probed by incoherent neutron scattering.

Authors:  Maksym Golub; Virginia Guillon; Guillaume Gotthard; Dominik Zeller; Nicolas Martinez; Tilo Seydel; Michael M Koza; Céline Lafaye; Damien Clavel; David von Stetten; Antoine Royant; Judith Peters
Journal:  J R Soc Interface       Date:  2019-03-29       Impact factor: 4.118

4.  Implementing electrostatic polarization cannot fill the gap between experimental and theoretical measurements for the ultrafast fluorescence decay of myoglobin.

Authors:  Bingbing Lin; Ya Gao; Yongxiu Li; John Z H Zhang; Ye Mei
Journal:  J Mol Model       Date:  2014-03-27       Impact factor: 1.810

5.  Dynamics Properties of Photosynthetic Microorganisms Probed by Incoherent Neutron Scattering.

Authors:  Daniela Russo; Maya Dimova Lambreva; Christiane Alba Simionesco; Pierre Sebban; Giuseppina Rea
Journal:  Biophys J       Date:  2019-04-02       Impact factor: 4.033

6.  Hydration water mobility is enhanced around tau amyloid fibers.

Authors:  Yann Fichou; Giorgio Schirò; François-Xavier Gallat; Cedric Laguri; Martine Moulin; Jérôme Combet; Michaela Zamponi; Michael Härtlein; Catherine Picart; Estelle Mossou; Hugues Lortat-Jacob; Jacques-Philippe Colletier; Douglas J Tobias; Martin Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

7.  Rigidity, secondary structure, and the universality of the boson peak in proteins.

Authors:  Stefania Perticaroli; Jonathan D Nickels; Georg Ehlers; Alexei P Sokolov
Journal:  Biophys J       Date:  2014-06-17       Impact factor: 4.033

Review 8.  Characterizing Protein Structure, Dynamics and Conformation in Lyophilized Solids.

Authors:  Balakrishnan S Moorthy; Lavanya K Iyer; Elizabeth M Topp
Journal:  Curr Pharm Des       Date:  2015       Impact factor: 3.116

Review 9.  Water in protein hydration and ligand recognition.

Authors:  Manuela Maurer; Chris Oostenbrink
Journal:  J Mol Recognit       Date:  2019-08-27       Impact factor: 2.891

10.  Correlative and integrated light and electron microscopy of in-resin GFP fluorescence, used to localise diacylglycerol in mammalian cells.

Authors:  Christopher J Peddie; Ken Blight; Emma Wilson; Charlotte Melia; Jo Marrison; Raffaella Carzaniga; Marie-Charlotte Domart; Peter O'Toole; Banafshe Larijani; Lucy M Collinson
Journal:  Ultramicroscopy       Date:  2014-02-22       Impact factor: 2.689

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