Literature DB >> 24912147

Microscopic insights into the protein-stabilizing effect of trimethylamine N-oxide (TMAO).

Jianqiang Ma1, Ileana M Pazos1, Feng Gai2.   

Abstract

Although it is widely known that trimethylamine N-oxide (TMAO), an osmolyte used by nature, stabilizes the folded state of proteins, the underlying mechanism of action is not entirely understood. To gain further insight into this important biological phenomenon, we use the C≡N stretching vibration of an unnatural amino acid, p-cyano-phenylalanine, to directly probe how TMAO affects the hydration and conformational dynamics of a model peptide and a small protein. By assessing how the lineshape and spectral diffusion properties of this vibration change with cosolvent conditions, we are able to show that TMAO achieves its protein-stabilizing ability through the combination of (at least) two mechanisms: (i) It decreases the hydrogen bonding ability of water and hence the stability of the unfolded state, and (ii) it acts as a molecular crowder, as suggested by a recent computational study, that can increase the stability of the folded state via the excluded volume effect.

Entities:  

Keywords:  2D IR; crowding; infrared; linear response function

Mesh:

Substances:

Year:  2014        PMID: 24912147      PMCID: PMC4060645          DOI: 10.1073/pnas.1403224111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  68 in total

1.  The hydrogen bond network structure within the hydration shell around simple osmolytes: urea, tetramethylurea, and trimethylamine-N-oxide, investigated using both a fixed charge and a polarizable water model.

Authors:  Anna Kuffel; Jan Zielkiewicz
Journal:  J Chem Phys       Date:  2010-07-21       Impact factor: 3.488

2.  Is a methyl group always hydrophobic? Hydrophilicity of trimethylamine-N-oxide, tetramethyl urea and tetramethylammonium ion.

Authors:  Yoshikata Koga; Peter Westh; Keiko Nishikawa; S Subramanian
Journal:  J Phys Chem B       Date:  2011-03-09       Impact factor: 2.991

3.  Tidal surge in the M2 proton channel, sensed by 2D IR spectroscopy.

Authors:  Ayanjeet Ghosh; Jade Qiu; William F DeGrado; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

4.  Ribonuclease S dynamics measured using a nitrile label with 2D IR vibrational echo spectroscopy.

Authors:  Sayan Bagchi; Steven G Boxer; Michael D Fayer
Journal:  J Phys Chem B       Date:  2012-03-23       Impact factor: 2.991

5.  Conformational dynamics and stability of HP35 studied with 2D IR vibrational echoes.

Authors:  Jean K Chung; Megan C Thielges; Michael D Fayer
Journal:  J Am Chem Soc       Date:  2012-07-16       Impact factor: 15.419

6.  Preferential interactions of proteins with salts in concentrated solutions.

Authors:  T Arakawa; S N Timasheff
Journal:  Biochemistry       Date:  1982-12-07       Impact factor: 3.162

7.  Using nitrile-derivatized amino acids as infrared probes of local environment.

Authors:  Zelleka Getahun; Cheng-Yen Huang; Ting Wang; Brenda De León; William F DeGrado; Feng Gai
Journal:  J Am Chem Soc       Date:  2003-01-15       Impact factor: 15.419

8.  Effects of urea and trimethylamine-N-oxide on the properties of water and the secondary structure of hen egg white lysozyme.

Authors:  Aneta Panuszko; Piotr Bruździak; Jan Zielkiewicz; Dariusz Wyrzykowski; Janusz Stangret
Journal:  J Phys Chem B       Date:  2009-11-05       Impact factor: 2.991

9.  Distinct water species confined at the interface of a phospholipid membrane.

Authors:  Victor V Volkov; D Jason Palmer; Roberto Righini
Journal:  Phys Rev Lett       Date:  2007-08-15       Impact factor: 9.161

10.  Volume exclusion and H-bonding dominate the thermodynamics and solvation of trimethylamine-N-oxide in aqueous urea.

Authors:  Jörg Rösgen; Ruby Jackson-Atogi
Journal:  J Am Chem Soc       Date:  2012-02-10       Impact factor: 15.419

View more
  50 in total

1.  4-Oxoproline as a Site-Specific Infrared Probe: Application To Assess Proline Isomerization and Dimer Formation.

Authors:  Rachel M Abaskharon; Debopreeti Mukherjee; Feng Gai
Journal:  J Phys Chem B       Date:  2019-06-10       Impact factor: 2.991

Review 2.  Conditionally disordered proteins: bringing the environment back into the fold.

Authors:  Andrew C Hausrath; Richard L Kingston
Journal:  Cell Mol Life Sci       Date:  2017-06-08       Impact factor: 9.261

Review 3.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

Review 4.  Site-specific infrared probes of proteins.

Authors:  Jianqiang Ma; Ileana M Pazos; Wenkai Zhang; Robert M Culik; Feng Gai
Journal:  Annu Rev Phys Chem       Date:  2015-01-12       Impact factor: 12.703

5.  Do guanidinium and tetrapropylammonium ions specifically interact with aromatic amino acid side chains?

Authors:  Bei Ding; Debopreeti Mukherjee; Jianxin Chen; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

6.  Effect of Osmolytes on Conformational Behavior of Intrinsically Disordered Protein α-Synuclein.

Authors:  Ishrat Jahan; Shahid M Nayeem
Journal:  Biophys J       Date:  2019-10-22       Impact factor: 4.033

7.  Site-Specific 1D and 2D IR Spectroscopy to Characterize the Conformations and Dynamics of Protein Molecular Recognition.

Authors:  Sashary Ramos; Megan C Thielges
Journal:  J Phys Chem B       Date:  2019-03-21       Impact factor: 2.991

8.  Temperature-dependent activity of kinesins is regulable.

Authors:  F Doval; K Chiba; R J McKenney; K M Ori-McKenney; M D Vershinin
Journal:  Biochem Biophys Res Commun       Date:  2020-06-04       Impact factor: 3.575

9.  Trimethylamine-N-oxide acutely increases cardiac muscle contractility.

Authors:  Carlee I Oakley; Julian A Vallejo; Derek Wang; Mark A Gray; LeAnn M Tiede-Lewis; Tilitha Shawgo; Emmanuel Daon; George Zorn; Jason R Stubbs; Michael J Wacker
Journal:  Am J Physiol Heart Circ Physiol       Date:  2020-04-03       Impact factor: 4.733

10.  Mechanistic Insight into Trimethylamine N-Oxide Recognition by the Marine Bacterium Ruegeria pomeroyi DSS-3.

Authors:  Chun-Yang Li; Xiu-Lan Chen; Xuan Shao; Tian-Di Wei; Peng Wang; Bin-Bin Xie; Qi-Long Qin; Xi-Ying Zhang; Hai-Nan Su; Xiao-Yan Song; Mei Shi; Bai-Cheng Zhou; Yu-Zhong Zhang
Journal:  J Bacteriol       Date:  2015-08-17       Impact factor: 3.490

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.