Literature DB >> 22994357

Paleopopulation genetics.

Jeffrey D Wall1, Montgomery Slatkin.   

Abstract

Paleopopulation genetics is a new field that focuses on the population genetics of extinct groups and ancestral populations (i.e., populations ancestral to extant groups). With recent advances in DNA sequencing technologies, we now have unprecedented ability to directly assay genetic variation from fossils. This allows us to address issues, such as past population structure, changes in population size, and evolutionary relationships between taxa, at a much greater resolution than can traditional population genetics studies. In this review, we discuss recent developments in this emerging field as well as prospects for the future.

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Year:  2012        PMID: 22994357      PMCID: PMC5102055          DOI: 10.1146/annurev-genet-110711-155557

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  98 in total

1.  Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci.

Authors:  Bruce Rannala; Ziheng Yang
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

2.  Inferences of species phylogeny in relation to segregation of ancient polymorphisms.

Authors:  C I Wu
Journal:  Genetics       Date:  1991-02       Impact factor: 4.562

3.  Rise and fall of the Beringian steppe bison.

Authors:  Beth Shapiro; Alexei J Drummond; Andrew Rambaut; Michael C Wilson; Paul E Matheus; Andrei V Sher; Oliver G Pybus; M Thomas P Gilbert; Ian Barnes; Jonas Binladen; Eske Willerslev; Anders J Hansen; Gennady F Baryshnikov; James A Burns; Sergei Davydov; Jonathan C Driver; Duane G Froese; C Richard Harington; Grant Keddie; Pavel Kosintsev; Michael L Kunz; Larry D Martin; Robert O Stephenson; John Storer; Richard Tedford; Sergei Zimov; Alan Cooper
Journal:  Science       Date:  2004-11-26       Impact factor: 47.728

4.  Gene trees, species trees and the segregation of ancestral alleles.

Authors:  R R Hudson
Journal:  Genetics       Date:  1992-06       Impact factor: 4.562

5.  On the probability of Neanderthal ancestry.

Authors:  M Nordborg
Journal:  Am J Hum Genet       Date:  1998-10       Impact factor: 11.025

6.  Doubts about complex speciation between humans and chimpanzees.

Authors:  Daven C Presgraves; Soojin V Yi
Journal:  Trends Ecol Evol       Date:  2009-08-05       Impact factor: 17.712

7.  A forkhead-domain gene is mutated in a severe speech and language disorder.

Authors:  C S Lai; S E Fisher; J A Hurst; F Vargha-Khadem; A P Monaco
Journal:  Nature       Date:  2001-10-04       Impact factor: 49.962

8.  Genetic restriction of HIV-1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene. Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, ALIVE Study.

Authors:  M Dean; M Carrington; C Winkler; G A Huttley; M W Smith; R Allikmets; J J Goedert; S P Buchbinder; E Vittinghoff; E Gomperts; S Donfield; D Vlahov; R Kaslow; A Saah; C Rinaldo; R Detels; S J O'Brien
Journal:  Science       Date:  1996-09-27       Impact factor: 47.728

9.  Sequencing the nuclear genome of the extinct woolly mammoth.

Authors:  Webb Miller; Daniela I Drautz; Aakrosh Ratan; Barbara Pusey; Ji Qi; Arthur M Lesk; Lynn P Tomsho; Michael D Packard; Fangqing Zhao; Andrei Sher; Alexei Tikhonov; Brian Raney; Nick Patterson; Kerstin Lindblad-Toh; Eric S Lander; James R Knight; Gerard P Irzyk; Karin M Fredrikson; Timothy T Harkins; Sharon Sheridan; Tom Pringle; Stephan C Schuster
Journal:  Nature       Date:  2008-11-20       Impact factor: 49.962

10.  Inference of human population history from individual whole-genome sequences.

Authors:  Heng Li; Richard Durbin
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

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  7 in total

Review 1.  Natural history collections as windows on evolutionary processes.

Authors:  Michael W Holmes; Talisin T Hammond; Guinevere O U Wogan; Rachel E Walsh; Katie LaBarbera; Elizabeth A Wommack; Felipe M Martins; Jeremy C Crawford; Katya L Mack; Luke M Bloch; Michael W Nachman
Journal:  Mol Ecol       Date:  2016-02       Impact factor: 6.185

Review 2.  Great ape genomics.

Authors:  Jeffrey D Wall
Journal:  ILAR J       Date:  2013

Review 3.  Toward a new history and geography of human genes informed by ancient DNA.

Authors:  Joseph K Pickrell; David Reich
Journal:  Trends Genet       Date:  2014-08-26       Impact factor: 11.639

4.  A path integral formulation of the Wright-Fisher process with genic selection.

Authors:  Joshua G Schraiber
Journal:  Theor Popul Biol       Date:  2013-11-21       Impact factor: 1.570

5.  Re-inventing ancient human DNA.

Authors:  Michael Knapp; Carles Lalueza-Fox; Michael Hofreiter
Journal:  Investig Genet       Date:  2015-05-01

6.  popRange: a highly flexible spatially and temporally explicit Wright-Fisher simulator.

Authors:  Kimberly F McManus
Journal:  Source Code Biol Med       Date:  2015-04-11

7.  Genome data from a sixteenth century pig illuminate modern breed relationships.

Authors:  O Ramírez; W Burgos-Paz; E Casas; M Ballester; E Bianco; I Olalde; G Santpere; V Novella; M Gut; C Lalueza-Fox; M Saña; M Pérez-Enciso
Journal:  Heredity (Edinb)       Date:  2014-09-10       Impact factor: 3.821

  7 in total

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